PXD026006
PXD026006 is an original dataset announced via ProteomeXchange.
Dataset Summary
| Title | Alerasool_Transcription_Factors_P77_VS18_BioID |
| Description | This dataset consists of 58 raw MS files and associated peak lists and result files, acquired on a TripleTOF 5600 mass spectrometer operated in Data Dependent Acquisition mode. DDA files were searched through Mascot and Comet, and this deposition lists the identification and SAINT scoring using iProphet.The files are associated with a manuscript submitted for publication by Alerasool et al. that determines the protein-protein and proximity interaction landscape of a subset of transcription factors. Two separate MassIVE submissions are associated with this dataset: A submission for the AP-MS data a submission for the BioID one. Contributors: Samples were generated by Nader Alerasool and affinity purification and mass spectrometry was performed by Zhen-Yuan Lin with oversight from Brett Larsen and Anne-Claude Gingras. Analysis was performed by Anne-Claude Gingras, Mikko Taipale and Benjamin L. Piette. Corresponding author: Mikko Taipale (mikko.taipale@utoronto.ca). Anne-Claude Gingras (gingras@lunenfeld.ca) should be contacted for questions on this dataset Supplementary files and tracking information: This submission is associated with 3 Supplementary Files (in addition to the README file) Table 1 describes the composition of this dataset Table 2 lists all the peptide identification evidence (as per iProphet) Table 3 lists the SAINTexpress interactions Internal reference from the Gingras lab ProHits implementation: Project: P77, Export version: VS18 SAINT Task ID: 5215 |
| HostingRepository | MassIVE |
| AnnounceDate | 2021-11-03 |
| AnnouncementXML | Submission_2021-11-03_13:11:41.432.xml |
| DigitalObjectIdentifier | |
| ReviewLevel | Non peer-reviewed dataset |
| DatasetOrigin | Original dataset |
| RepositorySupport | Supported dataset by repository |
| PrimarySubmitter | Gingras Lab |
| SpeciesList | scientific name: Homo sapiens; common name: human; NCBI TaxID: 9606; scientific name: Human adenovirus 5; NCBI TaxID: 28285; |
| ModificationList | deamidated L-asparagine; deamidated L-glutamine; L-methionine sulfoxide |
| Instrument | TripleTOF 5600 |
Dataset History
| Revision | Datetime | Status | ChangeLog Entry |
|---|---|---|---|
| 0 | 2021-05-13 11:18:16 | ID requested | |
| ⏵ 1 | 2021-11-03 13:11:41 | announced |
Publication List
| no publication |
Keyword List
| submitter keyword: BioID, Proximity-dependent biotinylation, Protein-protein interaction, Transcription Factor, Transactivator |
Contact List
| Anne-Claude Gingras | |
|---|---|
| contact affiliation | Lunenfeld-Tanenbaum Research Institute |
| contact email | gingras@lunenfeld.ca |
| lab head | |
| Gingras Lab | |
| contact affiliation | Samuel Lunenfeld Research Institute |
| contact email | gingras@mshri.on.ca |
| dataset submitter | |
Full Dataset Link List
| MassIVE dataset URI |
| Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://massive.ucsd.edu/MSV000087424/ |
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