PXD025941

PXD025941 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	Deep Semi-Supervised Learning Improves Universal Peptide Identification of Shotgun Proteomics Data
Description	Data and results for paper, "Deep Semi-Supervised Learning Improves Universal Peptide Identification of Shotgun Proteomics Data," found at: https://doi.org/10.1101/2020.11.12.380881 Deep learning software for PSM recalibration, called ProteoTorch-DNN, available at: https://github.com/proteoTorch/proteoTorch with documentation: https://proteotorch.readthedocs.io/en/latest/
HostingRepository	MassIVE
AnnounceDate	2021-05-11
AnnouncementXML	Submission_2021-05-11_12:58:48.376.xml
DigitalObjectIdentifier
ReviewLevel	Non peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Supported dataset by repository
PrimarySubmitter	John Halloran
SpeciesList	scientific name: Homo sapiens; common name: human; NCBI TaxID: 9606; scientific name: SARS coronavirus; NCBI TaxID: 227859; scientific name: Plasmodium; NCBI TaxID: 5820;
ModificationList	Carbamidomethyl
Instrument	Orbitrap Fusion; Orbitrap Fusion ETD; LTQ Orbitrap Elite; LTQ Orbitrap Velos

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2021-05-11 09:39:47	ID requested
⏵ 1	2021-05-11 12:58:48	announced

Publication List

no publication

no publication

Keyword List

submitter keyword: Deep Learning, Prosit, PSM Recalibration, Percolator, Deep Neural Networks, Machine Learning

submitter keyword: Deep Learning, Prosit, PSM Recalibration, Percolator, Deep Neural Networks, Machine Learning

Contact List

John Timothy Halloran
contact affiliation	University of California, Davis
contact email	jthalloran@ucdavis.edu
lab head
John Halloran
contact affiliation	University of California, Davis
contact email	jthalloran@ucdavis.edu
dataset submitter

Full Dataset Link List

MassIVE dataset URI
Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://massive.ucsd.edu/MSV000087402/

MassIVE dataset URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://massive.ucsd.edu/MSV000087402/