PXD025877

PXD025877 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	HLA class II ligandome of C1R BLCL cell line
Description	HLA-DR, -DQ and -DP ligands from transfected C1R cells were isolated using LB3.1, SPVL3 and B721 antibodies respectively.
HostingRepository	PRIDE
AnnounceDate	2021-08-19
AnnouncementXML	Submission_2021-08-18_22:54:08.329.xml
DigitalObjectIdentifier	https://dx.doi.org/10.6019/PXD025877
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Supported dataset by repository
PrimarySubmitter	Sri Ramarathinam
SpeciesList	scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationList	monohydroxylated residue; acetylated residue; deamidated residue
Instrument	TripleTOF 5600; Q Exactive

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2021-05-07 06:40:19	ID requested
1	2021-08-18 15:38:23	announced
⏵ 2	2021-08-18 22:54:09	announced	2021-08-19: Updated project metadata.

Publication List

Ramarathinam SH, Ho BK, Dudek NL, Purcell AW, HLA class II immunopeptidomics reveals that co-inherited HLA-allotypes within an extended haplotype can improve proteome coverage for immunosurveillance. Proteomics, 21(17-18):e2000160(2021) [pubmed]
10.1002/PMIC.202000160;

Ramarathinam SH, Ho BK, Dudek NL, Purcell AW, HLA class II immunopeptidomics reveals that co-inherited HLA-allotypes within an extended haplotype can improve proteome coverage for immunosurveillance. Proteomics, 21(17-18):e2000160(2021) [pubmed]

10.1002/PMIC.202000160;

Keyword List

submitter keyword: class II, C1R, DP,immunopeptidomics, DQ, HLA-DR

submitter keyword: class II, C1R, DP,immunopeptidomics, DQ, HLA-DR

Contact List

Anthony Purcell
contact affiliation	Head Immunoproteomics Laboratory Infection and Immunity Program Monash Biomedicine Discovery Institute Monash University, Clayton Campus Clayton 3800 Victoria Australia
contact email	anthony.purcell@monash.edu
lab head
Sri Ramarathinam
contact affiliation	Monash University
contact email	sri.ramarathinam@monash.edu
dataset submitter

Full Dataset Link List

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/08/PXD025877
PRIDE project URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/08/PXD025877

PRIDE project URI

Repository Record List

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