PXD025796

PXD025796 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	Quantitative Analysis of Samples Labeled with Multiplex iqPIR Cross-Linkers
Description	The isobaric quantitative protein interaction reporter (iqPIR) has now been extended to six channels, enabling quantitation of cross-links from six different samples simultaneously. To analyze data for such cross-linkers, the two-channel mode of quantitative analysis was extended to accommodate any number of channels with defined isotope peak offsets. The HeLa 1:1:1:1:1 data was used for the development of the quantitation method of the 6-plex iqPIR.
HostingRepository	PRIDE
AnnounceDate	2023-11-14
AnnouncementXML	Submission_2023-11-14_08:38:04.963.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Helisa Wippel
SpeciesList	scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationList	No PTMs are included in the dataset
Instrument	Q Exactive HF

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2021-05-05 01:53:32	ID requested
1	2023-03-10 23:13:01	announced
⏵ 2	2023-11-14 08:38:07	announced	2023-11-14: Updated project metadata.

Publication List

Chavez JD, Keller A, Wippel HH, Mohr JP, Bruce JE, Multiplexed Cross-Linking with Isobaric Quantitative Protein Interaction Reporter Technology. Anal Chem, 93(50):16759-16768(2021) [pubmed]

Chavez JD, Keller A, Wippel HH, Mohr JP, Bruce JE, Multiplexed Cross-Linking with Isobaric Quantitative Protein Interaction Reporter Technology. Anal Chem, 93(50):16759-16768(2021) [pubmed]

Keyword List

submitter keyword: quantitative analysis, mass spectrometry, crosslinking,multiplex iqPIR

submitter keyword: quantitative analysis, mass spectrometry, crosslinking,multiplex iqPIR

Contact List

James E. Bruce
contact affiliation	University of Washington, Genome Sciences, Bruce Lab.
contact email	jimbruce@uw.edu
lab head
Helisa Wippel
contact affiliation	University of Washington
contact email	hwippel@uw.edu
dataset submitter

Full Dataset Link List

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/03/PXD025796
PRIDE project URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/03/PXD025796

PRIDE project URI

Repository Record List

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