PXD025752

PXD025752 is an original dataset announced via ProteomeXchange.

Title	A time-resolved proteomic and prognostic map of COVID-19
Description	We performed quantitative proteomic profiling of 786 plasma samples from COVID-19 inpatients, treated at two different hospitals (Charité – Universitätsmedizin Berlin and University Hospital of Innsbruck). Sampling was performed at multiple time points throughout the course of the disease, to create a time-resolved map of COVID-19 progression. Full DIA-NN analysis reports are provided, as well as raw files for the QC runs.
HostingRepository	PRIDE
AnnounceDate	2021-07-19
AnnouncementXML	Submission_2021-07-19_05:56:44.272.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Michael Mülleder
SpeciesList	scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationList	iodoacetamide derivatized residue
Instrument	TripleTOF 6600

Revision	Datetime	Status	ChangeLog Entry
0	2021-05-02 23:33:19	ID requested
⏵ 1	2021-07-19 05:56:45	announced

Demichev V, Tober-Lau P, Lemke O, Nazarenko T, Thibeault C, Whitwell H, R, ö, hl A, Freiwald A, Szyrwiel L, Ludwig D, Correia-Melo C, Aulakh SK, Helbig ET, Stubbemann P, Lippert LJ, Gr, ü, ning NM, Blyuss O, Vernardis S, White M, Messner CB, Joannidis M, Sonnweber T, Klein SJ, Pizzini A, Wohlfarter Y, Sahanic S, Hilbe R, Schaefer B, Wagner S, Mittermaier M, Machleidt F, Garcia C, Ruwwe-Gl, ö, senkamp C, Lingscheid T, Bosquillon de Jarcy L, Stegemann MS, Pfeiffer M, J, ü, rgens L, Denker S, Zickler D, Enghard P, Zelezniak A, Campbell A, Hayward C, Porteous DJ, Marioni RE, Uhrig A, M, ü, ller-Redetzky H, Zoller H, L, ö, ffler-Ragg J, Keller MA, Tancevski I, Timms JF, Zaikin A, Hippenstiel S, Ramharter M, Witzenrath M, Suttorp N, Lilley K, M, ü, lleder M, Sander LE, Ralser M, Kurth F, Kleinschmidt M, Heim KM, Millet B, Meyer-Arndt L, H, ü, bner RH, Andermann T, Doehn JM, Opitz B, Sawitzki B, Grund D, Rad, ü, nzel P, Sch, ü, rmann M, Zoller T, Alius F, Knape P, Breitbart A, Li Y, Bremer F, Pergantis P, Sch, ü, rmann D, Temmesfeld-Wollbr, ü, ck B, Wendisch D, Brumhard S, Haenel SS, Conrad C, Georg P, Eckardt KU, Lehner L, Kruse JM, Ferse C, K, ö, rner R, Spies C, Edel A, Weber-Carstens S, Krannich A, Zvorc S, Li L, Behrens U, Schmidt S, R, ö, nnefarth M, Dang-Heine C, R, ö, hle R, Lieker E, Kretzler L, Wirsching I, Wollboldt C, Wu Y, Schwanitz G, Hillus D, Kasper S, Olk N, Horn A, Briesemeister D, Treue D, Hummel M, Corman VM, Drosten C, von Kalle C, A time-resolved proteomic and prognostic map of COVID-19. Cell Syst, 12(8):780-794.e7(2021) [pubmed]

ProteomeXchange project tag: Sars-cov-2, Covid-19

submitter keyword: Covid-19, scanningSWATH, Sars-Cov2, plasma

Markus Ralser
contact affiliation	Charité – Universitätsmedizin Berlin, Department of Biochemistry, 10117 Berlin, Germany; The Francis Crick Institute, Molecular Biology of Metabolism Laboratory, London NW11AT, UK
contact email	markus.ralser@charite.de
lab head
Michael Mülleder
contact affiliation	Core Facility -High-Throughput Mass Spectrometry, Charité -Universitätsmedizin Berlin, corporate member of Freie Universität Berlin, Humboldt-Universität zu Berlin and Berlin Institute of Health (BIH), Berlin, Germany
contact email	michael.muelleder@charite.de
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/07/PXD025752

PRIDE project URI

• PRIDE
  1. PXD025752
     1. Label: PRIDE project
     2. Name: A time-resolved proteomic and prognostic map of COVID-19