PXD025704

PXD025704 is an original dataset announced via ProteomeXchange.

Title	Proteomic response to drought and Phytophthora cinnamomi in Quercus ilex.
Description	Biotic and abiotic stresses are predicted to be the main drivers of forest tree decline and mortality in a climatic change scenario. It occurs, for example, in Quercus ilex, the main component of the Mediterranean forest, becoming a major environmental, economic and social concern. The decline syndrome is the result of factors interrelated in time and space. Breeding, through variability and elite genotype selection, is the only plausible strategy for forest management and conservation in nondomesticated, orphan species as is the case of the genus Quercus. By using a shotgun proteomics approach, the effect and the responses to combined drought stress and pathogen (Phytophthora cinnamomi) have been analyzed in two Holm oak populations with contrasting responses to each individual stress. Proteomics data are correlated with that of plant survival, damage symptoms, leaf chemical composition and physiological phenotypes (water content and photosynthetic activity). Changes in the protein profile depended on the population, stress, and time, with some consistent upaccumulated proteins related to synthesis, primary and secondary metabolism, and cell wall are discussed.
HostingRepository	PRIDE
AnnounceDate	2021-08-18
AnnouncementXML	Submission_2021-08-17_22:05:08.888.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Bonoso San Eufrasio Martínez
SpeciesList	scientific name: Quercus ilex; NCBI TaxID: 58334;
ModificationList	No PTMs are included in the dataset
Instrument	LTQ Orbitrap

Revision	Datetime	Status	ChangeLog Entry
0	2021-04-29 01:33:33	ID requested
⏵ 1	2021-08-17 22:05:09	announced

Dataset with its publication pending

submitter keyword: Quercus ilex, oak decline, climate change, Phytophthora cinnamomi, drought.

Jesús V. Jorrín Novo
contact affiliation	Agroforestry and Plant Biochemistry, Proteomics and Systems Biology. Departament of Biochemistry and Molecular Biology. University of Cordoba. Spain
contact email	z82samab@uco.es
lab head
Bonoso San Eufrasio Martínez
contact affiliation	Universidad de Córdoba. Departamento de Bioquimica y biología molecular. Grupo Bioquimica, proteómica y biología de sistemas vegetal y agroforestal
contact email	bonososaneufrasio@gmail.com
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/08/PXD025704

PRIDE project URI

• PRIDE
  1. PXD025704
     1. Label: PRIDE project
     2. Name: Proteomic response to drought and Phytophthora cinnamomi in Quercus ilex.