PXD025505 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | Synergistic effect of short- and long-read sequencing on functional meta-omics |
Description | Evaluation of short-read-only, long-read-only, and hybrid assembly approaches on metagenomic samples demonstrating how they affect gene and protein prediction which is relevant for downstream functional analyses. For a human gut microbiome sample, we use complementary metatranscriptomic, and metaproteomic data to evaluate the metagenomic-based protein predictions. |
HostingRepository | PRIDE |
AnnounceDate | 2022-02-17 |
AnnouncementXML | Submission_2022-02-17_00:47:51.863.xml |
DigitalObjectIdentifier | https://dx.doi.org/10.6019/PXD025505 |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Supported dataset by repository |
PrimarySubmitter | Benoit Kunath |
SpeciesList | scientific name: human gut metagenome; NCBI TaxID: 408170; |
ModificationList | monohydroxylated residue; iodoacetamide derivatized residue |
Instrument | Q Exactive HF |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2021-04-20 23:04:45 | ID requested | |
⏵ 1 | 2022-02-17 00:47:52 | announced | |
Publication List
Galata V, Busi SB, Kunath BJ, de Nies L, Calusinska M, Halder R, May P, Wilmes P, Laczny CC, Functional meta-omics provide critical insights into long- and short-read assemblies. Brief Bioinform, 22(6):(2021) [pubmed] |
Keyword List
submitter keyword: metaproteomics, functional omics, long-reads, gdb_metap |
Contact List
Paul Wilmes |
contact affiliation | Luxembourg Centre for Systems Biomedicine, University of Luxembourg, Luxembourg |
contact email | paul.wilmes@uni.lu |
lab head | |
Benoit Kunath |
contact affiliation | LCSB |
contact email | benoit.kunath@uni.lu |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
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PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD025505
- Label: PRIDE project
- Name: Synergistic effect of short- and long-read sequencing on functional meta-omics