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PXD025505

PXD025505 is an original dataset announced via ProteomeXchange.

Dataset Summary
TitleSynergistic effect of short- and long-read sequencing on functional meta-omics
DescriptionEvaluation of short-read-only, long-read-only, and hybrid assembly approaches on metagenomic samples demonstrating how they affect gene and protein prediction which is relevant for downstream functional analyses. For a human gut microbiome sample, we use complementary metatranscriptomic, and metaproteomic data to evaluate the metagenomic-based protein predictions.
HostingRepositoryPRIDE
AnnounceDate2022-02-17
AnnouncementXMLSubmission_2022-02-17_00:47:51.863.xml
DigitalObjectIdentifierhttp://dx.doi.org/10.6019/PXD025505
ReviewLevelPeer-reviewed dataset
DatasetOriginOriginal dataset
RepositorySupportSupported dataset by repository
PrimarySubmitterBenoit Kunath
SpeciesList scientific name: human gut metagenome; NCBI TaxID: 408170;
ModificationListmonohydroxylated residue; iodoacetamide derivatized residue
InstrumentQ Exactive HF
Dataset History
RevisionDatetimeStatusChangeLog Entry
02021-04-20 23:04:45ID requested
12022-02-17 00:47:52announced
Publication List
Galata V, Busi SB, Kunath BJ, de Nies L, Calusinska M, Halder R, May P, Wilmes P, Laczny CC, Functional meta-omics provide critical insights into long- and short-read assemblies. Brief Bioinform, 22(6):(2021) [pubmed]
Keyword List
submitter keyword: metaproteomics, functional omics, long-reads, gdb_metap
Contact List
Paul Wilmes
contact affiliationLuxembourg Centre for Systems Biomedicine, University of Luxembourg, Luxembourg
contact emailpaul.wilmes@uni.lu
lab head
Benoit Kunath
contact affiliationLCSB
contact emailbenoit.kunath@uni.lu
dataset submitter
Full Dataset Link List
Dataset FTP location
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Repository Record List
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