PXD025103 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | Chemical and Random Additive Noise Elimination (CRANE) - Case Study - Matrisome Dataset |
Description | The effectiveness of the novel electrospray ionisation - liquid chromatography mass spectrometry (ESI-LC-MS) data de-noising technique, CRANE, is demonstrated by denoising the MS1 and all the MS2 windows of a matrisome, data-independent acquisi-tion (DIA) MS dataset from Krasny, et al. (2018). |
HostingRepository | PRIDE |
AnnounceDate | 2021-07-26 |
AnnouncementXML | Submission_2021-07-26_08:04:58.359.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | Akila Seneviratne |
SpeciesList | scientific name: Mus musculus (Mouse); NCBI TaxID: 10090; |
ModificationList | iodoacetamide derivatized residue |
Instrument | TripleTOF 5600 |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2021-03-30 04:52:36 | ID requested | |
⏵ 1 | 2021-07-26 08:04:59 | announced | |
Publication List
Krasny L, Bland P, Kogata N, Wai P, Howard BA, Natrajan RC, Huang PH, SWATH mass spectrometry as a tool for quantitative profiling of the matrisome. J Proteomics, 189():11-22(2018) [pubmed] |
Keyword List
submitter keyword: DIA, LC-MSMS, Chemical Noise, Random Noise, Baseline Noise |
Contact List
Qing Zhong |
contact affiliation | Children’s Medical Research Institute, Faculty of Medicine and Health, The University of Sydney, Westmead, NSW 2145, Australia |
contact email | qzhong@cmri.org.au |
lab head | |
Akila Seneviratne |
contact affiliation | Children's Medical Research Institute, Westmead, NSW 2145 |
contact email | aseneviratne@cmri.org.au |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/07/PXD025103 |
PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD025103
- Label: PRIDE project
- Name: Chemical and Random Additive Noise Elimination (CRANE) - Case Study - Matrisome Dataset