PXD024610

PXD024610 is an original dataset announced via ProteomeXchange.

Title	Species identification of silks by protein mass spectrometry
Description	We investigate a range of methods for solubilizing modern and archaeological silks and demonstrate a protocol using mass spectrometry-based proteomics to successfully differentiate modern samples of Bombyx, Antheraea, and Samia -produced silks matching samples to species level. We also analyzed archaeological silks from excavations at the ancient city of Palmyra, Syria, and provide evidence that these silks were produced by A. mylitta, which is the first direct evidence supporting the production and trade of Indian wild silk in antiquity.
HostingRepository	PRIDE
AnnounceDate	2024-10-22
AnnouncementXML	Submission_2024-10-22_05:36:56.423.xml
DigitalObjectIdentifier	https://dx.doi.org/10.6019/PXD024610
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Supported dataset by repository
PrimarySubmitter	Boyoung Lee
SpeciesList	scientific name: Samia ricini; NCBI TaxID: 63990; scientific name: Antheraea assamensis; NCBI TaxID: 91021; scientific name: Bombyx mori (Silk moth); NCBI TaxID: 7091; scientific name: Antheraea yamamai; NCBI TaxID: 7121; scientific name: Antheraea pernyi; NCBI TaxID: 7119; scientific name: Antheraea mylitta; NCBI TaxID: 34739;
ModificationList	monohydroxylated residue; deamidated residue; iodoacetamide derivatized residue
Instrument	Waters instrument model

Revision	Datetime	Status	ChangeLog Entry
0	2021-03-09 05:40:45	ID requested
1	2022-05-25 09:11:03	announced
⏵ 2	2024-10-22 05:36:59	announced	2024-10-22: Updated project metadata.

Lee B, Pires E, Pollard AM, McCullagh JSO, Species identification of silks by protein mass spectrometry reveals evidence of wild silk use in antiquity. Sci Rep, 12(1):4579(2022) [pubmed]

10.1038/s41598-022-08167-3;

10.6019/PXD024610;

submitter keyword: silk, fibroins, wild silk, nanoLC-MS/MS

Boyoung Lee
contact affiliation	University of Oxford/Smithsonian Institutions
contact email	bo0lee@outlook.com
lab head
Boyoung Lee
contact affiliation	University of Oxford
contact email	bo0lee@outlook.com
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/04/PXD024610

PRIDE project URI

• PRIDE
  1. PXD024610
     1. Label: PRIDE project
     2. Name: Species identification of silks by protein mass spectrometry