PXD024582

PXD024582 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	Identification of alpha-satellite RNA interacting proteins
Description	We set out to identify proteins that bind alpha-satellite ncRNAs in HCT-116 and SW-480 colorectal cancer human cell lines. We performed RNA pulldown followed by mass spectrometry identification of the associated proteins. Among the identified proteins, we observed a statistical overrepresenttion of some ontology ssociated to mitotic progression in HCT-116 cells, but not in SW-480 cells.
HostingRepository	PRIDE
AnnounceDate	2022-08-12
AnnouncementXML	Submission_2022-08-11_23:47:25.728.xml
DigitalObjectIdentifier	https://dx.doi.org/10.6019/PXD024582
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Supported dataset by repository
PrimarySubmitter	Rodrigo Cáceres
SpeciesList	scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationList	No PTMs are included in the dataset
Instrument	LTQ Orbitrap Velos

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2021-03-08 03:17:37	ID requested
⏵ 1	2022-08-11 23:47:26	announced

Publication List

C, á, ceres-Guti, é, rrez RE, Andonegui MA, Oliva-Rico DA, Gonz, á, lez-Barrios R, Luna F, Arriaga-Canon C, L, ó, pez-Saavedra A, Prada D, Castro C, Parmentier L, D, í, az-Ch, á, vez J, Alfaro-Mora Y, Navarro-Delgado EI, Fabian-Morales E, Tran B, Shetty J, Zhao Y, Alcaraz N, De la Rosa C, Reyes JL, H, é, douin S, Hub, é F, Francastel C, Herrera LA, -Satellite RNAs. FEBS J, 289(7):1858-1875(2022) [pubmed]

C, á, ceres-Guti, é, rrez RE, Andonegui MA, Oliva-Rico DA, Gonz, á, lez-Barrios R, Luna F, Arriaga-Canon C, L, ó, pez-Saavedra A, Prada D, Castro C, Parmentier L, D, í, az-Ch, á, vez J, Alfaro-Mora Y, Navarro-Delgado EI, Fabian-Morales E, Tran B, Shetty J, Zhao Y, Alcaraz N, De la Rosa C, Reyes JL, H, é, douin S, Hub, é F, Francastel C, Herrera LA, -Satellite RNAs. FEBS J, 289(7):1858-1875(2022) [pubmed]

Keyword List

submitter keyword: RNA pulldown, alpha satellite, ncRNA

submitter keyword: RNA pulldown, alpha satellite, ncRNA

Contact List

Luis A. Herrera
contact affiliation	Unidad de Investigación Biomédica en Cáncer, Instituto Nacional de Cancerología-Instituto de Investigaciones Biomédicas, UNAM/ Dirección General, Instituto Nacional de Medicina Genómica, Periférico Sur 4809, Arenal Tepepan, 1450 Tlalpan, Ciudad de México
contact email	herreram@biomedicas.unam.mx
lab head
Rodrigo Cáceres
contact affiliation	Unidad de Investigación Biomédica en Cáncer - UNAM - Instituto Nacional de Cancerología
contact email	rodrigocaceresgutierrez@gmail.com
dataset submitter

Full Dataset Link List

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/08/PXD024582
PRIDE project URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/08/PXD024582

PRIDE project URI

Repository Record List

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