PXD024539

PXD024539 is an original dataset announced via ProteomeXchange.

Title	Proteome analysis of Mycobacterium avium subspecies paratuberculosis infected macrophages following the crossing of the intestinal mucosal epithelial cells reveals the synthesis of macrophage proteins associated with dissemination
Description	Johne’s disease is a chronic, incurable and fatal enteric infection of ruminant species caused by Mycobacterium avium subspecies paratuberulosis (MAP) and responsible in hundreds of millions of dollars in losses for the agricultural industry. Natural infection usually begins with bacterial uptake and translocation through the epithelium of the small intestine, followed by ingestion by tissue macrophages and dissemination via the lymphatic or blood system throughout the body. To gain insights into the host innate immune responses, promoting an intracellular phenotype and adaptation of MAP within phagocytic cells, we utilized the previously developed cell culture passage model and the mass spectrometric-based quantitative proteomics approach. Using the cell culture system, which mimics an in vivo interaction of MAP with intestinal epithelium and tissue macrophages, bacteria were passed through the bovine epithelial cells and, subsequently, used for macrophage infection (termed indirect infection), while uninfected cells and macrophage infection initiated with the culture grown bacteria (termed direct infection) served as controls. Approximately 3,900 proteins were identified across all studied groups. The comparison within the subset of proteins that showed synthesis for more than two-fold in the direct infection over the uninfected control revealed an enrichment for the pro-inflammatory pathways such as the NF-κB and cytokine/chemokine signaling, positive regulation of defense response, cell activation involved in the immune response and adaptive immune system. While these responses were absent in the indirect infection, cellular pathways such as cell cycle, healing, regulation of cell adhesion, ensemble of core extracellular matrix proteins, cell surface integrins and proteins mediating the integrin signaling were remarkably high within the indirect infection. In addition to the global analysis of the macrophage proteome, in this study, we validate the proteomics data and confirm our hypothesis that MAP passage through epithelial cells can alter the way in which bacteria are able to modulate the expression and signaling of integrins in phagocytes. We demonstrate that predominant expression of integrins in the indirectly infected macrophages allows phagocytic cells to initiate stronger binding and efficient translocation through the endothelial cells, suggesting the important role of integrins in the spread of MAP infection.
HostingRepository	PRIDE
AnnounceDate	2022-02-17
AnnouncementXML	Submission_2022-02-17_00:20:03.226.xml
DigitalObjectIdentifier	https://dx.doi.org/10.6019/PXD024539
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Supported dataset by repository
PrimarySubmitter	Liping Yang
SpeciesList	scientific name: Mus musculus (Mouse); NCBI TaxID: 10090;
ModificationList	monohydroxylated residue; acetylated residue; iodoacetamide derivatized residue
Instrument	Orbitrap Fusion Lumos

Revision	Datetime	Status	ChangeLog Entry
0	2021-03-04 22:48:32	ID requested
⏵ 1	2022-02-17 00:20:04	announced

Phillips IL, Danelishvili L, Bermudez LE, Infection Reveals a Mechanism of Pathogen Dissemination. Proteomes, 9(2):(2021) [pubmed]

submitter keyword: Proteomics, Mycobacterium avium subspecies paratuberculosis, macrophage, host response, integrins, spread

Lia Danelishivili
contact affiliation	Oregon State University
contact email	Lia.Danelishvili@oregonstate.edu
lab head
Liping Yang
contact affiliation	Oregon State University
contact email	liping.yang@oregonstate.edu
dataset submitter

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PRIDE project URI

• PRIDE
  1. PXD024539
     1. Label: PRIDE project
     2. Name: Proteome analysis of Mycobacterium avium subspecies paratuberculosis infected macrophages following the crossing of the intestinal mucosal epithelial cells reveals the synthesis of macrophage proteins associated with dissemination