PXD024408
PXD024408 is an original dataset announced via ProteomeXchange.
Dataset Summary
Title | Molecular Profiling of Two HPV16+ OPSCC Brain Metastases |
Description | We report a detailed characterization of the HPV16 genome in two brain metastases from OPSCC tumors. The use of a target enrichment strategy followed by next generation sequencing (NGS) provided an effective way to identify viral infection in tumor genome, including internal deletions and insertion sites into the host genome. Applying similar strategies to a larger cohort of HPV+ HNSCC brain metastases could help to identify biomarkers that can predict metastasis and/or identify novel therapeutic options. |
HostingRepository | MassIVE |
AnnounceDate | 2021-08-12 |
AnnouncementXML | Submission_2021-08-12_16:53:19.514.xml |
DigitalObjectIdentifier | |
ReviewLevel | Non peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | Brian Searle |
SpeciesList | scientific name: Homo sapiens; common name: human; NCBI TaxID: 9606; |
ModificationList | Carbamidomethyl |
Instrument | Orbitrap Fusion Lumos |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
---|---|---|---|
0 | 2021-02-28 20:21:27 | ID requested | |
⏵ 1 | 2021-08-12 16:53:19 | announced |
Publication List
no publication |
Keyword List
submitter keyword: HPV16, brain metastases |
Contact List
Brian Searle | |
---|---|
contact affiliation | Institute for Systems Biology |
contact email | bsearle@systemsbiology.org |
lab head | |
Brian Searle | |
contact affiliation | Institute for Systems Biology |
contact email | bsearle@systemsbiology.org |
dataset submitter |
Full Dataset Link List
MassIVE dataset URI |
Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://massive.ucsd.edu/MSV000086965/ |