⮝ Full datasets listing

PXD024408

PXD024408 is an original dataset announced via ProteomeXchange.

Dataset Summary
TitleMolecular Profiling of Two HPV16+ OPSCC Brain Metastases
DescriptionWe report a detailed characterization of the HPV16 genome in two brain metastases from OPSCC tumors. The use of a target enrichment strategy followed by next generation sequencing (NGS) provided an effective way to identify viral infection in tumor genome, including internal deletions and insertion sites into the host genome. Applying similar strategies to a larger cohort of HPV+ HNSCC brain metastases could help to identify biomarkers that can predict metastasis and/or identify novel therapeutic options.
HostingRepositoryMassIVE
AnnounceDate2021-08-12
AnnouncementXMLSubmission_2021-08-12_16:53:19.514.xml
DigitalObjectIdentifier
ReviewLevelNon peer-reviewed dataset
DatasetOriginOriginal dataset
RepositorySupportUnsupported dataset by repository
PrimarySubmitterBrian Searle
SpeciesList scientific name: Homo sapiens; common name: human; NCBI TaxID: 9606;
ModificationListCarbamidomethyl
InstrumentOrbitrap Fusion Lumos
Dataset History
RevisionDatetimeStatusChangeLog Entry
02021-02-28 20:21:27ID requested
12021-08-12 16:53:19announced
Publication List
no publication
Keyword List
submitter keyword: HPV16, brain metastases
Contact List
Brian Searle
contact affiliationInstitute for Systems Biology
contact emailbsearle@systemsbiology.org
lab head
Brian Searle
contact affiliationInstitute for Systems Biology
contact emailbsearle@systemsbiology.org
dataset submitter
Full Dataset Link List
MassIVE dataset URI
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://massive.ucsd.edu/MSV000086965/