PXD024181

PXD024181 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	Cooper Salvia columbariae chia seeds, roots, hypocotyls, and cotyledons
Description	Cooper sought to increase the sensitivity of peptide detection and broaden the range of tissues covered through his analysis of chia proteomes. Targeted tissues were ungerminated seeds and the roots, hypocotyls, and cotyledons of five-day-old seedlings. As in Husselmann 2017, TCEP was employed for reducing disulfides, but iodoacetamide alkylated the cysteines. Mass spectrometry took place at the Mass Spectrometry and Proteomics Facility at the Johns Hopkins School of Medicine. The Thermo Orbitrap Fusion Lumos Tribrid mass spectrometer yielded an average of 54,868 tandem mass spectra per LC-MS/MS experiment, producing up to twenty MS/MS per second at its peak.
HostingRepository	MassIVE
AnnounceDate	2021-02-15
AnnouncementXML	Submission_2021-02-15_05:39:00.xml
DigitalObjectIdentifier
ReviewLevel	Non peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Supported dataset by repository
PrimarySubmitter	David L. Tabb
SpeciesList	scientific name: Salvia columbariae; NCBI TaxID: 95165;
ModificationList	Oxidation; Acetyl; Carbamidomethyl
Instrument	Orbitrap Fusion Lumos

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2021-02-15 04:04:25	ID requested
⏵ 1	2021-02-15 05:39:01	announced

Publication List

no publication

no publication

Keyword List

submitter keyword: chia, root, hypocotyl, cotyledon

submitter keyword: chia, root, hypocotyl, cotyledon

Contact List

Bret Cooper
contact affiliation	USDA-ARS
contact email	bret.cooper@ars.usda.gov
lab head
David L. Tabb
contact affiliation	Stellenbosch University
contact email	dtabb@sun.ac.za
dataset submitter

Full Dataset Link List

MassIVE dataset URI
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MassIVE dataset URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://massive.ucsd.edu/MSV000086863/