PXD023812

PXD023812 is an original dataset announced via ProteomeXchange.

Title	Comparison of the transcriptome, translatome and proteome response to diurnal oscillations in cyanobacteria
Description	The aim of this study was to find the cause for the previously reported inconsistency between oscillating transcription and constant protein levels under day-night growth conditions in cyanobacteria. To determine whether translational regulation counteracts transcriptional changes, Synechocystis sp. PCC 6803 was cultivated in an artificial day-night setting and the level of transcription, translation and protein was measured across the genome at different time points using mRNA sequencing, ribosome profiling and quantitative proteomics. This proteomics data set represents one layer of a larger data set covering three 'omics' levels.
HostingRepository	PRIDE
AnnounceDate	2021-09-10
AnnouncementXML	Submission_2021-09-10_00:17:54.070.xml
DigitalObjectIdentifier	https://dx.doi.org/10.6019/PXD023812
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Supported dataset by repository
PrimarySubmitter	Michael Jahn
SpeciesList	scientific name: Synechocystis sp. PCC 6803 substr. GT-I; NCBI TaxID: 1080228;
ModificationList	monohydroxylated residue; iodoacetamide derivatized residue
Instrument	Q Exactive HF

Revision	Datetime	Status	ChangeLog Entry
0	2021-01-25 23:18:05	ID requested
⏵ 1	2021-09-10 00:17:54	announced

Karlsen J, Asplund-Samuelsson J, Jahn M, Vitay D, Hudson EP, Slow Protein Turnover Explains Limited Protein-Level Response to Diurnal Transcriptional Oscillations in Cyanobacteria. Front Microbiol, 12():657379(2021) [pubmed]

submitter keyword: dyanobacteria, diurnal gene expression, protein turnover, post-transcriptional regulation, metabolic regulation, shotgun proteomics, data-dependent acquisition, openMS, MSGF+

Paul Hudson
contact affiliation	1-Department of protein Science, KTH Royal Institute of Technology, Stockholm, Sweden 2-Science for Life Laboratory, Stockholm, Sweden
contact email	paul.hudson@scilifelab.se
lab head
Michael Jahn
contact affiliation	Science for Life Laboratory Stockholm
contact email	michael.jahn@scilifelab.se
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/09/PXD023812

PRIDE project URI

• PRIDE
  1. PXD023812
     1. Label: PRIDE project
     2. Name: Comparison of the transcriptome, translatome and proteome response to diurnal oscillations in cyanobacteria