PXD023805
PXD023805 is an original dataset announced via ProteomeXchange.
Dataset Summary
Title | Identification of HLA class I immunopeptide from human colon tissue (Tumor) |
Description | HLA Class I immunopeptides were affinity purified by W6/32 antibody and analyzed by Orbitrap Fusion Lumos with FAIMS. Personalized database which includes patient-specific somatic mutations obtained from whole exome sequencing (WES) data was used for database search. Identification results were filtered at 1% FDR thresholds by searching against a randomized decoy database using Proteome Discoverer 2.4 (Sequest HT). |
HostingRepository | jPOST |
AnnounceDate | 2022-08-20 |
AnnouncementXML | Submission_2022-09-18_03:02:40.141.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | Yuriko MINEGISHI |
SpeciesList | scientific name: Homo sapiens (Human); NCBI TaxID: 9606; |
ModificationList | unknown modification; L-methionine sulfoxide; S-carboxamidomethyl-L-cysteine |
Instrument | Orbitrap Fusion Lumos |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
---|---|---|---|
0 | 2021-01-25 18:39:57 | ID requested | |
1 | 2022-08-19 08:00:29 | announced | |
2 | 2022-08-21 23:23:34 | announced | 2022-08-22: Updated PubMed. |
⏵ 3 | 2022-09-18 03:02:40 | announced | 2022-09-18: Updated FTP location. |
Publication List
Minegishi Y, Kiyotani K, Nemoto K, Inoue Y, Haga Y, Fujii R, Saichi N, Nagayama S, Ueda K, Differential ion mobility mass spectrometry in immunopeptidomics identifies neoantigens carrying colorectal cancer driver mutations. Commun Biol, 5(1):831(2022) [pubmed] |
Keyword List
submitter keyword: HLA Class I, Immunopeptide, colon cancer, solid tumor, FAIMS |
Contact List
Koji UEDA | |
---|---|
lab head | |
Yuriko MINEGISHI | |
contact affiliation | Japanese Foundation for Cancer Research |
dataset submitter |
Full Dataset Link List
jPOST dataset URI |
Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.jpostdb.org/JPST001069/ |