PXD023804

PXD023804 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	Identification of HLA class I immunopeptide from human colon tissue (Normal)
Description	HLA Class I immunopeptides were affinity purified by W6/32 antibody and analyzed by Orbitrap Fusion Lumos with FAIMS. Personalized database which includes patient-specific somatic mutations obtained from whole exome sequencing (WES) data was used for database search. Identification results were filtered at 1% FDR thresholds by searching against a randomized decoy database using Proteome Discoverer 2.4 (Sequest HT).
HostingRepository	jPOST
AnnounceDate	2022-08-20
AnnouncementXML	Submission_2022-09-18_02:17:47.890.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Yuriko MINEGISHI
SpeciesList	scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationList	unknown modification; L-methionine sulfoxide; S-carboxamidomethyl-L-cysteine
Instrument	Orbitrap Fusion Lumos

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2021-01-25 17:57:41	ID requested
1	2022-08-19 08:00:17	announced
2	2022-08-21 23:23:24	announced	2022-08-22: Updated PubMed.
⏵ 3	2022-09-18 02:17:48	announced	2022-09-18: Updated FTP location.

Publication List

Minegishi Y, Kiyotani K, Nemoto K, Inoue Y, Haga Y, Fujii R, Saichi N, Nagayama S, Ueda K, Differential ion mobility mass spectrometry in immunopeptidomics identifies neoantigens carrying colorectal cancer driver mutations. Commun Biol, 5(1):831(2022) [pubmed]

Minegishi Y, Kiyotani K, Nemoto K, Inoue Y, Haga Y, Fujii R, Saichi N, Nagayama S, Ueda K, Differential ion mobility mass spectrometry in immunopeptidomics identifies neoantigens carrying colorectal cancer driver mutations. Commun Biol, 5(1):831(2022) [pubmed]

Keyword List

submitter keyword: HLA Class I, Immunopeptide, colon tissue, normal adjacent tissue, FAIMS

submitter keyword: HLA Class I, Immunopeptide, colon tissue, normal adjacent tissue, FAIMS

Contact List

Koji UEDA
lab head
Yuriko MINEGISHI
contact affiliation	Japanese Foundation for Cancer Research
dataset submitter

Full Dataset Link List

jPOST dataset URI
Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.jpostdb.org/JPST001070/

jPOST dataset URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.jpostdb.org/JPST001070/