PXD023646

PXD023646 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	Proteomics of biphenyl labelling study
Description	protein based stable isotope probing was performed for identifying microorganisms actually responsible for biphenyl biodegradation in soil environment.
HostingRepository	PRIDE
AnnounceDate	2024-10-22
AnnouncementXML	Submission_2024-10-22_05:32:25.660.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Songcan Chen
SpeciesList	scientific name: soil metagenome; NCBI TaxID: 410658;
ModificationList	carbamoylated residue; monohydroxylated residue
Instrument	LTQ Orbitrap

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2021-01-18 00:07:39	ID requested
1	2022-02-16 13:25:20	announced
⏵ 2	2024-10-22 05:32:29	announced	2024-10-22: Updated project metadata.

Publication List

10.1038/s41396-021-01022-9;
Chen SC, Budhraja R, Adrian L, Calabrese F, Stryhanyuk H, Musat N, Richnow HH, Duan GL, Zhu YG, Musat F, Novel clades of soil biphenyl degraders revealed by integrating isotope probing, multi-omics, and single-cell analyses. ISME J, 15(12):3508-3521(2021) [pubmed]

10.1038/s41396-021-01022-9;

Chen SC, Budhraja R, Adrian L, Calabrese F, Stryhanyuk H, Musat N, Richnow HH, Duan GL, Zhu YG, Musat F, Novel clades of soil biphenyl degraders revealed by integrating isotope probing, multi-omics, and single-cell analyses. ISME J, 15(12):3508-3521(2021) [pubmed]

Keyword List

submitter keyword: soil, 13C-labelled peptides

submitter keyword: soil, 13C-labelled peptides

Contact List

Florin Musat
contact affiliation	Helmholtz Centre for Environmental Research - UFZ
contact email	florin.musat@ufz.de
lab head
Songcan Chen
contact affiliation	Helmholtz Centre for Environmental Research - UFZ
contact email	songcan.chen@ufz.de
dataset submitter

Full Dataset Link List

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/02/PXD023646
PRIDE project URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/02/PXD023646

PRIDE project URI

Repository Record List

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