PXD023587 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | Micro-flow LC-MS/MS Based Single Shot Proteomics |
Description | In this study, we systematically optimized the micro-flow LC-MS/MS system based ssDDA proteomics. Our results show that combination of 2 – 3 h gradient with prosit rescore method identified the highest number of proteins and peptides. There is no benefit to increase column length. A single 3 h run identified about 9,200 proteins from 50 µg of Arabidopsis protein digest. The micro-flow LC-MS/MS system based ssDDA proteomics can be widely used for routine proteomics analysis of large cohort samples. |
HostingRepository | PRIDE |
AnnounceDate | 2021-07-02 |
AnnouncementXML | Submission_2021-07-01_23:06:06.028.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | Yangyang Bian |
SpeciesList | scientific name: Mus musculus (Mouse); NCBI TaxID: 10090; scientific name: Arabidopsis thaliana (Mouse-ear cress); NCBI TaxID: 3702; scientific name: Homo sapiens (Human); NCBI TaxID: 9606; |
ModificationList | monohydroxylated residue; acetylated residue; iodoacetamide derivatized residue |
Instrument | Q Exactive HF-X |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2021-01-14 01:53:42 | ID requested | |
1 | 2021-07-01 07:57:51 | announced | |
⏵ 2 | 2021-07-01 23:06:06 | announced | 2021-07-02: Updated project metadata. |
Publication List
10.1021/ACS.ANALCHEM.1C00738; |
Bian Y, The M, Giansanti P, Mergner J, Zheng R, Wilhelm M, Boychenko A, Kuster B, 000 Proteins from Cell Lines and Tissues by Single-Shot Microflow LC-MS/MS. Anal Chem, 93(25):8687-8692(2021) [pubmed] |
Keyword List
submitter keyword: Single Shot Proteomics,Micro-flow LC, 1.0 mm ID column |
Contact List
Bernhard Kuster |
contact affiliation | Chair of Proteomics and Bioanalytics, Technische Universitaet Muenchen |
contact email | kuster@tum.de |
lab head | |
Yangyang Bian |
contact affiliation | Chair of Proteomics and Bioanalytics, Technical University of Munich |
contact email | yangyang.bian@tum.de |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
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PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD023587
- Label: PRIDE project
- Name: Micro-flow LC-MS/MS Based Single Shot Proteomics