PXD023413

PXD023413 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	Phosphoproteomics of C2C12 differentiation
Description	Phosphoproteomic analysis of myogenesis in C2C12 myoblasts differentiating into myotubes. Four time points were analysed (0min, 30min, 24h and 5d) with four biological replicates.
HostingRepository	PRIDE
AnnounceDate	2024-10-22
AnnouncementXML	Submission_2024-10-22_06:25:22.043.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Benjamin Parker
SpeciesList	scientific name: Mus musculus (Mouse); NCBI TaxID: 10090;
ModificationList	carbamoylated residue; phosphorylated residue; acetylated residue; monohydroxylated residue
Instrument	Q Exactive HF-X

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2021-01-05 01:34:16	ID requested
1	2024-01-26 06:00:22	announced
⏵ 2	2024-10-22 06:25:29	announced	2024-10-22: Updated project metadata.

Publication List

Xiao D, Lin M, Liu C, Geddes TA, Burchfield JG, Parker BL, Humphrey SJ, Yang P, SnapKin: a snapshot deep learning ensemble for kinase-substrate prediction from phosphoproteomics data. NAR Genom Bioinform, 5(4):lqad099(2023) [pubmed]
10.1093/nargab/lqad099;

Xiao D, Lin M, Liu C, Geddes TA, Burchfield JG, Parker BL, Humphrey SJ, Yang P, SnapKin: a snapshot deep learning ensemble for kinase-substrate prediction from phosphoproteomics data. NAR Genom Bioinform, 5(4):lqad099(2023) [pubmed]

10.1093/nargab/lqad099;

Keyword List

submitter keyword: C2C12 myoblast, myogenesis, phosphoproteomics

submitter keyword: C2C12 myoblast, myogenesis, phosphoproteomics

Contact List

Benjamin Parker
contact affiliation	The University of Melbourne
contact email	ben.parker@unimelb.edu.au
lab head
Benjamin Parker
contact affiliation	The University of Melbourne
contact email	ben.parker@unimelb.edu.au
dataset submitter

Full Dataset Link List

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2024/01/PXD023413
PRIDE project URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2024/01/PXD023413

PRIDE project URI

Repository Record List

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