PXD023103
PXD023103 is an original dataset announced via ProteomeXchange.
Dataset Summary
Title | Precipitation mediates the role of stochastic process in soil microbial community assembly |
Description | Precipitation change is often associated with climate warming, but its effects on soil microbial community assembly remain relatively underexplored. Traditionally, it is thought that increasing the magnitude of environmental changes will increase the importance of deterministic processes in community assembly. Here, while ±30% precipitation promoted deterministic processes in the assembly of soil prokaryotic community during a five-year semiarid grassland experiment, ±60% precipitation increased the importance of stochastic processes like random birth/death, countering to conventional thinking. Similarly, analysis of a multifactorial experiment showed that +54% precipitation stimulated a random bacterial birth process while other environmental change factors did not. In addition, the increased taxonomic stochasticity under ±60% precipitation translated into functional stochasticity at the gene, protein, and enzyme levels. Our results revealed the distinctive mechanism and critical role of precipitation in determining microbial assemblages, demonstrating the need to integrate microbial taxonomic information to better predict their functional responses to precipitation changes. |
HostingRepository | iProX |
AnnounceDate | 2020-12-13 |
AnnouncementXML | Submission_2023-02-20_19:22:49.496.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | Ximei Zhang |
SpeciesList | scientific name: uncultivated soil bacterium; NCBI TaxID: 97476; |
ModificationList | No PTMs are included in the dataset |
Instrument | Q Exactive |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
---|---|---|---|
0 | 2020-12-13 18:13:29 | ID requested | |
1 | 2021-12-08 18:08:00 | announced | |
⏵ 2 | 2023-02-20 19:22:51 | announced | 2023-02-21: Update information. |
Publication List
Xu M, Zhu X, Chen S, Pang S, Liu W, Gao L, Yang W, Li T, Zhang Y, Luo C, He D, Wang Z, Fan Y, Han X, Zhang X, Distinctive pattern and mechanism of precipitation changes affecting soil microbial assemblages in the Eurasian steppe. iScience, 25(3):103893(2022) [pubmed] |
Keyword List
submitter keyword: climate change, functional diversity, metagenome, precipitation change, rare biosphere, soil microbial diversity, stochastic process |
Contact List
Ximei Zhang | |
---|---|
contact affiliation | Institute of Environment and Sustainable Development in Agriculture, Chinese Academy of Agricultural Science |
contact email | zhangximei@caas.cn |
lab head | |
Ximei Zhang | |
contact affiliation | Institute of Environment and Sustainable Development in Agriculture, Chinese Academy of Agricultural Sciences |
contact email | zhangximei@caas.cn |
dataset submitter |
Full Dataset Link List
iProX dataset URI |