PXD022898

PXD022898 is an original dataset announced via ProteomeXchange.

Title	Proteome and secretome profiling of Knufia chersonesos MA5789 wt and MA5790 mutant exposed to low sheer simulated microgravity (LSSMG)
Description	Proteome and secretome of the extremotolerant rock black fungus Knufia chersonesos and its nonmelanized spontaneous mutant were analyzed following the fungus growth under LSSMG in rotating bioreactors (High Aspect Ratio Vessels; HARV). Tandem Mass Tags (TMS)-based quantitative shotgun proteomics was applied to compare gravity to microgravity conditions as well as to elucidate differences in the response between wild type and mutant strain.
HostingRepository	PRIDE
AnnounceDate	2021-05-31
AnnouncementXML	Submission_2021-05-31_08:09:10.824.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Markus Kalkum
SpeciesList	scientific name: Knufia petricola; NCBI TaxID: 206542;
ModificationList	TMT6plex-126 reporter+balance reagent acylated residue; monohydroxylated residue; iodoacetamide derivatized residue
Instrument	Orbitrap Fusion Lumos

Revision	Datetime	Status	ChangeLog Entry
0	2020-12-03 14:39:49	ID requested
⏵ 1	2021-05-31 08:09:11	announced

Tesei D, Chiang AJ, Kalkum M, Stajich JE, Mohan GBM, Sterflinger K, Venkateswaran K, . Front Genet, 12():638708(2021) [pubmed]

submitter keyword: Knufia chersonesos

simulated microgravity

TMT proteomics

Donatella Tesei
contact affiliation	Department of Biotechnology, University of Natural Resources and Life Sciences, BOKU, Vienna, Austria
contact email	Donatella.tesei@boku.ac.at
lab head
Markus Kalkum
contact affiliation	City of Hope
contact email	mkalkum@coh.org
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/05/PXD022898

PRIDE project URI

• PRIDE
  1. PXD022898
     1. Label: PRIDE project
     2. Name: Proteome and secretome profiling of Knufia chersonesos MA5789 wt and MA5790 mutant exposed to low sheer simulated microgravity (LSSMG)