PXD022882 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | Metaproteome analysis of two synthetic bacterial consortia |
Description | Two synthetic bacterial consortia (SC) composed by bacterial strains isolated from a natural phenanthrene-degrading consortium (CON), Sphingobium sp. AM, Klebsiella aerogenes B, Pseudomonas sp. Bc-h and T, Burkholderia sp. Bk and Inquilinus limosus Inq were grown in LMM supplemented with 200 mg/L of phenanthrene (PHN) during 72 hours in triplicate. |
HostingRepository | PRIDE |
AnnounceDate | 2021-09-09 |
AnnouncementXML | Submission_2021-09-09_14:46:08.652.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | Marianela Macchi |
SpeciesList | scientific name: Burkholderia sp. Bk; NCBI TaxID: 1938441; scientific name: Pseudomonas sp.; NCBI TaxID: 306; scientific name: Inquilinus limosus; NCBI TaxID: 171674; scientific name: Sphingobium sp. AM; NCBI TaxID: 1176302; scientific name: Klebsiella aerogenes; NCBI TaxID: 548; |
ModificationList | monohydroxylated residue; iodoacetamide derivatized residue |
Instrument | Q Exactive |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2020-12-03 00:06:28 | ID requested | |
⏵ 1 | 2021-09-09 14:46:09 | announced | |
Publication List
Macchi M, Festa S, Nieto E, Irazoqui JM, Vega-Vela NE, Junca H, Valacco MP, Amadio AF, Morelli IS, Coppotelli BM, Design and evaluation of synthetic bacterial consortia for optimized phenanthrene degradation through the integration of genomics and shotgun proteomics. Biotechnol Rep (Amst), 29():e00588(2021) [pubmed] |
Keyword List
submitter keyword: Shotgun Proteomics, Synthetic Bacterial Consortia (SC), Sphingobium sp. (AM), Klebsiella aerogenes (B), Pseudomonas sp. (T), Pseudomonas sp (Bc-h), Inquilinus limosus (Inq), Burkholderia sp. (Bk) |
Contact List
Bibiana Marina Coppotelli |
contact affiliation | CINDEFI-CONICET-UNLP |
contact email | bibicoppotelli@gmail.com |
lab head | |
Marianela Macchi |
contact affiliation | CINDEFI-UNLP |
contact email | mariamacchi307@hotmail.com |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/09/PXD022882 |
PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD022882
- Label: PRIDE project
- Name: Metaproteome analysis of two synthetic bacterial consortia