PXD022859

PXD022859 is an original dataset announced via ProteomeXchange.

Title	Meta-omics analysis indicates the saliva microbiome and its proteins associated with the prognosis of oral cancer patients
Description	The relationship between the microbial changes with clinical-pathological outcomes are still far from being conclusive. Herein, we investigate the ability of metagenomics (MG) and metaproteomics (MP) saliva data in distinguishing C, L0 and L1 patients. For that, we combined two strategies using MG analysis using 16S rDNA sequencing of saliva cells, and MP analysis using liquid chromatography tandem mass spectrometry of saliva supernatant and cells.
HostingRepository	PRIDE
AnnounceDate	2023-11-14
AnnouncementXML	Submission_2023-11-14_08:30:19.678.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Adriana Franco Paes Leme
SpeciesList	scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationList	No PTMs are included in the dataset
Instrument	LTQ Orbitrap

Revision	Datetime	Status	ChangeLog Entry
0	2020-12-01 23:38:26	ID requested
1	2022-11-09 03:33:43	announced
⏵ 2	2023-11-14 08:30:20	announced	2023-11-14: Updated project metadata.

Granato DC, Neves LX, Trino LD, Carnielli CM, Lopes AFB, Yokoo S, Pauletti BA, Domingues RR, S, á JO, Persinoti G, Paix, ã, o DAA, Rivera C, de S, á, Patroni FM, Tommazetto G, Santos-Silva AR, Lopes MA, de Castro G, Brand, ã, o TB, Prado-Ribeiro AC, Squina FM, Telles GP, Paes Leme AF, Meta-omics analysis indicates the saliva microbiome and its proteins associated with the prognosis of oral cancer patients. Biochim Biophys Acta Proteins Proteom, 1869(8):140659(2021) [pubmed]

submitter keyword: saliva, oral cancer diagnosis and prognosis, mass spectrometry, oral squamous cell carcinoma, oral microbiome

Adriana Franco Paes Leme
contact affiliation	Laboratório Nacional de Biociências, LNBio, CNPEM, Campinas, São Paulo, Brazil
contact email	adriana.paesleme@lnbio.cnpem.br
lab head
Adriana Franco Paes Leme
contact affiliation	CNPEM
contact email	adriana.paesleme@lnbio.cnpem.br
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/11/PXD022859

PRIDE project URI

• PRIDE
  1. PXD022859
     1. Label: PRIDE project
     2. Name: Meta-omics analysis indicates the saliva microbiome and its proteins associated with the prognosis of oral cancer patients