PXD022816

PXD022816 is an original dataset announced via ProteomeXchange.

Title	RawBeans: a simple, vendor independent, raw-data quality control tool
Description	Every laboratory performing mass spectrometry based proteomics strives to generate high quality data. Among the many factors that influence the outcome of any experiment in proteomics is performance of the LC-MS system, which should be monitored continuously. This process is termed quality control (QC). We present an easy to use, rapid tool, which produces a visual, HTML based report that includes the key parameters needed to monitor LC-MS system perfromance. The tool, named RawBeans, can generate a report for individual files, or for a set of samples from a whole experiment. We anticipate it will help proteomics users and experts evaluate raw data quality, independent of data processing. The tool is available here: https://bitbucket.org/incpm/prot-qc/downloads.
HostingRepository	PRIDE
AnnounceDate	2021-03-11
AnnouncementXML	Submission_2021-03-11_05:07:03.339.xml
DigitalObjectIdentifier	https://dx.doi.org/10.6019/PXD022816
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Supported dataset by repository
PrimarySubmitter	Yishai Levin
SpeciesList	scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationList	No PTMs are included in the dataset
Instrument	Q Exactive

Revision	Datetime	Status	ChangeLog Entry
0	2020-11-30 03:59:01	ID requested
⏵ 1	2021-03-11 05:07:04	announced

Morgenstern D, Barzilay R, Levin Y, RawBeans: A Simple, Vendor-Independent, Raw-Data Quality-Control Tool. J Proteome Res, 20(4):2098-2104(2021) [pubmed]

submitter keyword: Quality Control, QC

Yishai Levin
contact affiliation	Weizmann Institute of Science
contact email	yishai.levin@weizmann.ac.il
lab head
Yishai Levin
contact affiliation	Weizmann Institute of Science, Israel
contact email	yishai.levin@gmail.com
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/03/PXD022816

PRIDE project URI

• PRIDE
  1. PXD022816
     1. Label: PRIDE project
     2. Name: RawBeans: a simple, vendor independent, raw-data quality control tool