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PXD022772

PXD022772 is an original dataset announced via ProteomeXchange.

Dataset Summary
TitleMS Annika: A new Cross-Linking Search Engine
DescriptionA cross linking mass spectrometry search engine was developed and implemented into Thermo Proteome Discoverer. The search engine is capable to handle several linker types as well as data input formats. To demonstrate its ability processing Bruker -ion mobility data, synthetic peptides (Beveridge, et. al., Nat. Commun., 2020, doi: 10.1038/s41467-020-14608-2) were analyzed and the respective files are availible here.
HostingRepositoryPRIDE
AnnounceDate2024-10-22
AnnouncementXMLSubmission_2024-10-22_05:22:26.687.xml
DigitalObjectIdentifier
ReviewLevelPeer-reviewed dataset
DatasetOriginOriginal dataset
RepositorySupportUnsupported dataset by repository
PrimarySubmitterManuel Matzinger
SpeciesList scientific name: Streptococcus pyogenes ABC020006030; NCBI TaxID: 1438992;
ModificationListmonohydroxylated residue; iodoacetamide derivatized residue
InstrumenttimsTOF Pro
Dataset History
RevisionDatetimeStatusChangeLog Entry
02020-11-26 07:39:24ID requested
12021-05-27 07:16:24announced
22021-05-27 22:20:18announced2021-05-28: Updated project metadata.
32022-02-14 01:40:51announced2022-02-14: Updated project metadata.
42023-11-14 08:51:25announced2023-11-14: Updated project metadata.
52024-10-22 05:22:28announced2024-10-22: Updated project metadata.
Publication List
10.1021/acs.jproteome.0c01000;
Pirklbauer GJ, Stieger CE, Matzinger M, Winkler S, Mechtler K, Dorfer V, MS Annika: A New Cross-Linking Search Engine. J Proteome Res, 20(5):2560-2569(2021) [pubmed]
10.1021/ACS.JPROTEOME.0C01000;
Keyword List
ProteomeXchange project tag: EPIC-XS
submitter keyword: XL-MS,Proteome-Discoverer, ion-mobility, search-engine
Contact List
Karl Mechtler
contact affiliationProtein Chemistry Facility, Institute for Molecular Pathology (IMP), Campus Vienna Biocenter 1, Vienna, Austria
contact emailkarl.mechtler@impa.ac.at
lab head
Manuel Matzinger
contact affiliationIMP / University of Vienna
contact emailmanuel.matzinger@imp.ac.at
dataset submitter
Full Dataset Link List
Dataset FTP location
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PRIDE project URI
Repository Record List
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