PXD022772
PXD022772 is an original dataset announced via ProteomeXchange.
Dataset Summary
Title | MS Annika: A new Cross-Linking Search Engine |
Description | A cross linking mass spectrometry search engine was developed and implemented into Thermo Proteome Discoverer. The search engine is capable to handle several linker types as well as data input formats. To demonstrate its ability processing Bruker -ion mobility data, synthetic peptides (Beveridge, et. al., Nat. Commun., 2020, doi: 10.1038/s41467-020-14608-2) were analyzed and the respective files are availible here. |
HostingRepository | PRIDE |
AnnounceDate | 2024-10-22 |
AnnouncementXML | Submission_2024-10-22_05:22:26.687.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | Manuel Matzinger |
SpeciesList | scientific name: Streptococcus pyogenes ABC020006030; NCBI TaxID: 1438992; |
ModificationList | monohydroxylated residue; iodoacetamide derivatized residue |
Instrument | timsTOF Pro |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
---|---|---|---|
0 | 2020-11-26 07:39:24 | ID requested | |
1 | 2021-05-27 07:16:24 | announced | |
2 | 2021-05-27 22:20:18 | announced | 2021-05-28: Updated project metadata. |
3 | 2022-02-14 01:40:51 | announced | 2022-02-14: Updated project metadata. |
4 | 2023-11-14 08:51:25 | announced | 2023-11-14: Updated project metadata. |
⏵ 5 | 2024-10-22 05:22:28 | announced | 2024-10-22: Updated project metadata. |
Publication List
10.1021/acs.jproteome.0c01000; |
Pirklbauer GJ, Stieger CE, Matzinger M, Winkler S, Mechtler K, Dorfer V, MS Annika: A New Cross-Linking Search Engine. J Proteome Res, 20(5):2560-2569(2021) [pubmed] |
10.1021/ACS.JPROTEOME.0C01000; |
Keyword List
ProteomeXchange project tag: EPIC-XS |
submitter keyword: XL-MS,Proteome-Discoverer, ion-mobility, search-engine |
Contact List
Karl Mechtler | |
---|---|
contact affiliation | Protein Chemistry Facility, Institute for Molecular Pathology (IMP), Campus Vienna Biocenter 1, Vienna, Austria |
contact email | karl.mechtler@impa.ac.at |
lab head | |
Manuel Matzinger | |
contact affiliation | IMP / University of Vienna |
contact email | manuel.matzinger@imp.ac.at |
dataset submitter |
Full Dataset Link List
Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/05/PXD022772 |
PRIDE project URI |
Repository Record List
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