PXD022772

PXD022772 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	MS Annika: A new Cross-Linking Search Engine
Description	A cross linking mass spectrometry search engine was developed and implemented into Thermo Proteome Discoverer. The search engine is capable to handle several linker types as well as data input formats. To demonstrate its ability processing Bruker -ion mobility data, synthetic peptides (Beveridge, et. al., Nat. Commun., 2020, doi: 10.1038/s41467-020-14608-2) were analyzed and the respective files are availible here.
HostingRepository	PRIDE
AnnounceDate	2024-10-22
AnnouncementXML	Submission_2024-10-22_05:22:26.687.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Manuel Matzinger
SpeciesList	scientific name: Streptococcus pyogenes ABC020006030; NCBI TaxID: 1438992;
ModificationList	monohydroxylated residue; iodoacetamide derivatized residue
Instrument	timsTOF Pro

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2020-11-26 07:39:24	ID requested
1	2021-05-27 07:16:24	announced
2	2021-05-27 22:20:18	announced	2021-05-28: Updated project metadata.
3	2022-02-14 01:40:51	announced	2022-02-14: Updated project metadata.
4	2023-11-14 08:51:25	announced	2023-11-14: Updated project metadata.
⏵ 5	2024-10-22 05:22:28	announced	2024-10-22: Updated project metadata.

Publication List

10.1021/acs.jproteome.0c01000;
Pirklbauer GJ, Stieger CE, Matzinger M, Winkler S, Mechtler K, Dorfer V, MS Annika: A New Cross-Linking Search Engine. J Proteome Res, 20(5):2560-2569(2021) [pubmed]
10.1021/ACS.JPROTEOME.0C01000;

10.1021/acs.jproteome.0c01000;

Pirklbauer GJ, Stieger CE, Matzinger M, Winkler S, Mechtler K, Dorfer V, MS Annika: A New Cross-Linking Search Engine. J Proteome Res, 20(5):2560-2569(2021) [pubmed]

10.1021/ACS.JPROTEOME.0C01000;

Keyword List

ProteomeXchange project tag: EPIC-XS
submitter keyword: XL-MS,Proteome-Discoverer, ion-mobility, search-engine

ProteomeXchange project tag: EPIC-XS

submitter keyword: XL-MS,Proteome-Discoverer, ion-mobility, search-engine

Contact List

Karl Mechtler
contact affiliation	Protein Chemistry Facility, Institute for Molecular Pathology (IMP), Campus Vienna Biocenter 1, Vienna, Austria
contact email	karl.mechtler@impa.ac.at
lab head
Manuel Matzinger
contact affiliation	IMP / University of Vienna
contact email	manuel.matzinger@imp.ac.at
dataset submitter

Full Dataset Link List

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/05/PXD022772
PRIDE project URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/05/PXD022772

PRIDE project URI

Repository Record List

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