PXD022456-2
PXD022456 is an original dataset announced via ProteomeXchange.
Dataset Summary
Title | Confirmation of plant viral proteins and identification of specific viral strains by nanoLC-ESI-Q-TOF using single-leaf-tissue samples |
Description | An efficient protein extraction protocol without any precipitation steps was applied to plant samples from ten economically important plant hosts. Viral proteins from fourteen important viruses (WDV, BYDV/BYDV-PAV, BMV, TAV, CaMV, TMV, TVCV, PPV, TuMV, BCMV, SrMV, SCMV, TRSV, BBWV-2) from seven different families (Geminiviridae, Luteoviridae, Bromoviridae, Caulimoviridae, Virgaviridae, Potyviridae, Secoviridae) were detected in infected samples. Protein database of host proteins and potential pathogen proteins was assembled separately for each host and based on existing online plant virus pathogen lists. For PPV, WDV, BYDV a succesfull discrimination to virus strains (as demonstrated for PPV, WDV) or distinct disease species (BYDV) was also demonstrated. |
HostingRepository | PRIDE |
AnnounceDate | 2020-11-20 |
AnnouncementXML | Submission_2020-11-25_02:40:51.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | Pavel Cejnar |
SpeciesList | scientific name: Phaseolus vulgaris; NCBI TaxID: 3885; scientific name: Prunus armeniaca; NCBI TaxID: 36596; scientific name: Triticum aestivum (Wheat); NCBI TaxID: 4565; scientific name: Chenopodium giganteum; NCBI TaxID: 434242; scientific name: Sorghum bicolor; NCBI TaxID: 4558; scientific name: Prunus domestica; NCBI TaxID: 3758; scientific name: Zea mays (Maize); NCBI TaxID: 4577; scientific name: Hordeum vulgare (Barley); NCBI TaxID: 4513; scientific name: Brassica rapa subsp. pekinensis; NCBI TaxID: 51351; scientific name: Nicotiana tabacum (Common tobacco); NCBI TaxID: 4097; |
ModificationList | iodoacetamide derivatized residue |
Instrument | maXis |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
---|---|---|---|
0 | 2020-11-10 07:56:25 | ID requested | |
1 | 2020-11-20 07:02:47 | announced | |
⏵ 2 | 2020-11-25 02:40:52 | announced | 2020-11-25: Updated publication reference for PubMed record(s): 33228257. |
Publication List
Cejnar P, Ku, č, kov, á Š, Š, antr, ů, č, ek J, Glasa M, Kom, í, nek P, Mih, á, lik D, Slav, í, kov, á L, Lei, š, ov, á, -Svobodov, á L, Smirnova T, Hynek R, Kundu JK, Ry, š, á, nek P, Efficient Confirmation of Plant Viral Proteins and Identification of Specific Viral Strains by nanoLC-ESI-Q-TOF Using Single-Leaf-Tissue Samples. Pathogens, 9(11):(2020) [pubmed] |
Keyword List
submitter keyword: plant, viral proteins, LC-MSMS, WDV, BYDV/BYDV-PAV, BMV, TAV, CaMV, TMV, TVCV, PPV, TuMV, BCMV, SrMV, SCMV, TRSV, BBWV-2 |
Contact List
Pavel Cejnar | |
---|---|
contact affiliation | Department of Computing and Control Engineering, University of Chemistry and Technology in Prague, Technická 5, 166 28 Praha 6, Czech Republic |
contact email | pavel.cejnar@vscht.cz |
lab head | |
Pavel Cejnar | |
contact affiliation | Department of Computing and Control Engineering, University of Chemistry and Technology in Prague, Technická 5, 166 28 Praha 6, Czech Republic |
contact email | pavel.cejnar@vscht.cz |
dataset submitter |
Full Dataset Link List
Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/11/PXD022456 |
PRIDE project URI |
Repository Record List
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