PXD022110

PXD022110 is an original dataset announced via ProteomeXchange.

Title	Identification of novel protein-coding sequences in Eucalyptus grandis plants by high-resolution mass spectrometry
Description	Eucalyptus species are widely used in the forestry industry, and a significant increase in the number of sequences available in database repositories has been observed for these species. In proteomics, a protein is identified by correlating the theoretical fragmentation spectrum derived from genomic/transcriptomic data against the experimental fragmentation mass spectrum acquired from large-scale analysis of protein mixtures. Proteogenomics is an alternative approach that can identify novel proteins encoded by regions previously considered as non-coding. This study aimed to confidently identify and confirm the existence of previously unknown protein-coding sequences in the Eucalyptus grandis genome.
HostingRepository	PRIDE
AnnounceDate	2021-01-07
AnnouncementXML	Submission_2021-01-07_01:28:13.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Gabriel Jorge
SpeciesList	scientific name: Eucalyptus grandis; NCBI TaxID: 71139;
ModificationList	monohydroxylated residue; iodoacetamide derivatized residue
Instrument	Q Exactive

Revision	Datetime	Status	ChangeLog Entry
0	2020-10-21 02:33:48	ID requested
⏵ 1	2021-01-07 01:28:15	announced

Jorge GL, Balbuena TS, Identification of novel protein-coding sequences in Eucalyptus grandis plants by high-resolution mass spectrometry. Biochim Biophys Acta Proteins Proteom, 1869(3):140594(2021) [pubmed]

submitter keyword: bottom-up proteomics, parallel reaction monitoring, proteogenomics, proteomics.

Gabriel Lemes Jorge
contact affiliation	Department of Technology, Proteomics, UNESP, Brazil
contact email	gabriel.lemes@unesp.br
lab head
Gabriel Jorge
contact affiliation	UNESP
contact email	gabriel.lemes@unesp.br
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/01/PXD022110

PRIDE project URI

• PRIDE
  1. PXD022110
     1. Label: PRIDE project
     2. Name: Identification of novel protein-coding sequences in Eucalyptus grandis plants by high-resolution mass spectrometry