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PXD022110

PXD022110 is an original dataset announced via ProteomeXchange.

Dataset Summary
TitleIdentification of novel protein-coding sequences in Eucalyptus grandis plants by high-resolution mass spectrometry
DescriptionEucalyptus species are widely used in the forestry industry, and a significant increase in the number of sequences available in database repositories has been observed for these species. In proteomics, a protein is identified by correlating the theoretical fragmentation spectrum derived from genomic/transcriptomic data against the experimental fragmentation mass spectrum acquired from large-scale analysis of protein mixtures. Proteogenomics is an alternative approach that can identify novel proteins encoded by regions previously considered as non-coding. This study aimed to confidently identify and confirm the existence of previously unknown protein-coding sequences in the Eucalyptus grandis genome.
HostingRepositoryPRIDE
AnnounceDate2021-01-07
AnnouncementXMLSubmission_2021-01-07_01:28:13.xml
DigitalObjectIdentifier
ReviewLevelPeer-reviewed dataset
DatasetOriginOriginal dataset
RepositorySupportUnsupported dataset by repository
PrimarySubmitterGabriel Jorge
SpeciesList scientific name: Eucalyptus grandis; NCBI TaxID: 71139;
ModificationListmonohydroxylated residue; iodoacetamide derivatized residue
InstrumentQ Exactive
Dataset History
RevisionDatetimeStatusChangeLog Entry
02020-10-21 02:33:48ID requested
12021-01-07 01:28:15announced
Publication List
Jorge GL, Balbuena TS, Identification of novel protein-coding sequences in Eucalyptus grandis plants by high-resolution mass spectrometry. Biochim Biophys Acta Proteins Proteom, 1869(3):140594(2021) [pubmed]
Keyword List
submitter keyword: bottom-up proteomics, parallel reaction monitoring, proteogenomics, proteomics.
Contact List
Gabriel Lemes Jorge
contact affiliationDepartment of Technology, Proteomics, UNESP, Brazil
contact emailgabriel.lemes@unesp.br
lab head
Gabriel Jorge
contact affiliationUNESP
contact emailgabriel.lemes@unesp.br
dataset submitter
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Dataset FTP location
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PRIDE project URI
Repository Record List
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