PXD022110 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | Identification of novel protein-coding sequences in Eucalyptus grandis plants by high-resolution mass spectrometry |
Description | Eucalyptus species are widely used in the forestry industry, and a significant increase in the number of sequences available in database repositories has been observed for these species. In proteomics, a protein is identified by correlating the theoretical fragmentation spectrum derived from genomic/transcriptomic data against the experimental fragmentation mass spectrum acquired from large-scale analysis of protein mixtures. Proteogenomics is an alternative approach that can identify novel proteins encoded by regions previously considered as non-coding. This study aimed to confidently identify and confirm the existence of previously unknown protein-coding sequences in the Eucalyptus grandis genome. |
HostingRepository | PRIDE |
AnnounceDate | 2021-01-07 |
AnnouncementXML | Submission_2021-01-07_01:28:13.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | Gabriel Jorge |
SpeciesList | scientific name: Eucalyptus grandis; NCBI TaxID: 71139; |
ModificationList | monohydroxylated residue; iodoacetamide derivatized residue |
Instrument | Q Exactive |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2020-10-21 02:33:48 | ID requested | |
⏵ 1 | 2021-01-07 01:28:15 | announced | |
Publication List
Jorge GL, Balbuena TS, Identification of novel protein-coding sequences in Eucalyptus grandis plants by high-resolution mass spectrometry. Biochim Biophys Acta Proteins Proteom, 1869(3):140594(2021) [pubmed] |
Keyword List
submitter keyword: bottom-up proteomics, parallel reaction monitoring, proteogenomics, proteomics. |
Contact List
Gabriel Lemes Jorge |
contact affiliation | Department of Technology, Proteomics, UNESP, Brazil |
contact email | gabriel.lemes@unesp.br |
lab head | |
Gabriel Jorge |
contact affiliation | UNESP |
contact email | gabriel.lemes@unesp.br |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/01/PXD022110 |
PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD022110
- Label: PRIDE project
- Name: Identification of novel protein-coding sequences in Eucalyptus grandis plants by high-resolution mass spectrometry