PXD022048

PXD022048 is an original dataset announced via ProteomeXchange.

Title	Systematic reanalysis of co-fractionation mass spectrometry data
Description	A total of 206 co-fractionation mass spectrometry (CF-MS) experiments were downloaded from public proteomics repositories such as PRIDE and MASSIVE, then re-analyzed with MaxQuant.
HostingRepository	PRIDE
AnnounceDate	2024-10-08
AnnouncementXML	Submission_2024-10-08_11:40:07.195.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Michael Skinnider
SpeciesList	scientific name: Xenopus laevis (African clawed frog); NCBI TaxID: 8355; scientific name: Mus musculus (Mouse); NCBI TaxID: 10090; scientific name: Caenorhabditis elegans; NCBI TaxID: 6239; scientific name: Arabidopsis thaliana (Mouse-ear cress); NCBI TaxID: 3702; scientific name: Dictyostelium discoideum (Slime mold); NCBI TaxID: 44689; scientific name: Triticum aestivum (Wheat); NCBI TaxID: 4565; scientific name: Oryza sativa (Rice); NCBI TaxID: 4530; scientific name: Trypanosoma brucei; NCBI TaxID: 5691; scientific name: Homo sapiens (Human); NCBI TaxID: 9606; scientific name: Zea mays (Maize); NCBI TaxID: 4577; scientific name: Saccharomyces cerevisiae (Baker's yeast); NCBI TaxID: 4932; scientific name: Drosophila melanogaster (Fruit fly); NCBI TaxID: 7227;
ModificationList	acetylated residue; monohydroxylated residue
Instrument	Thermo Finnigan instrument model

Revision	Datetime	Status	ChangeLog Entry
0	2020-10-18 23:25:40	ID requested
⏵ 1	2024-10-08 11:40:09	announced

Skinnider MA, Foster LJ, Meta-analysis defines principles for the design and analysis of co-fractionation mass spectrometry experiments. Nat Methods, 18(7):806-815(2021) [pubmed]

10.1038/s41592-021-01194-4;

submitter keyword: CF-MS

Leonard Foster
contact affiliation	Department of Biochemistry and Molecular Biology, University of British Columbia
contact email	foster@msl.ubc.ca
lab head
Michael Skinnider
contact affiliation	University of British Columbia
contact email	michael.skinnider@msl.ubc.ca
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/04/PXD022048

PRIDE project URI

• PRIDE
  1. PXD022048
     1. Label: PRIDE project
     2. Name: Systematic reanalysis of co-fractionation mass spectrometry data