PXD021827 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | Impact of KsgA/Dim1 on proteostasis in Haloferax volcanii and Escherichia coli |
Description | Shotgun label-free analysis of Haloferax volcanii wildtype cells in comparison to strains deleted and catalytically impaired of the almost universally conserved ribosomal RNA dimethyltransferase KsgA/Dim1and of Escherichia coli wildtype strain in comparison to KsgA/Dim1 deleted strain. |
HostingRepository | PRIDE |
AnnounceDate | 2021-01-25 |
AnnouncementXML | Submission_2021-01-24_22:56:30.xml |
DigitalObjectIdentifier | https://dx.doi.org/10.6019/PXD021827 |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Supported dataset by repository |
PrimarySubmitter | Marlene Oeffinger |
SpeciesList | scientific name: Escherichia coli; NCBI TaxID: 562; scientific name: Haloferax volcanii; NCBI TaxID: 2246; |
ModificationList | monoacetylated residue; monohydroxylated residue; iodoacetamide derivatized residue |
Instrument | Orbitrap Fusion |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2020-10-05 03:51:22 | ID requested | |
⏵ 1 | 2021-01-24 22:56:31 | announced | |
Publication List
Kn, ü, ppel R, Trahan C, Kern M, Wagner A, Gr, ü, nberger F, Hausner W, Quax TEF, Albers SV, Oeffinger M, Ferreira-Cerca S, Insights into synthesis and function of KsgA/Dim1-dependent rRNA modifications in archaea. Nucleic Acids Res, 49(3):1662-1687(2021) [pubmed] |
Keyword List
submitter keyword: KsgA, Dim1, dimethyltransferase, m6A, ribosome, archaea, Haloferax volcanii, Escherichia coli. |
Contact List
Marlene Heloise Oeffinger |
contact affiliation | Associate Research Professor, Institut de recherches cliniques de Montréal (IRCM) Professeure agrégée, Département de biochimie et médecine moléculaire, Université de Montréal Associate Professor, Division of Experimental Medicine, McGill University |
contact email | marlene.oeffinger@ircm.qc.ca |
lab head | |
Marlene Oeffinger |
contact affiliation | Institut de recherches cliniques Montreal (IRCM) Universite de Montreal |
contact email | marlene.oeffinger@ircm.qc.ca |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/01/PXD021827 |
PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD021827
- Label: PRIDE project
- Name: Impact of KsgA/Dim1 on proteostasis in Haloferax volcanii and Escherichia coli