PXD021827

PXD021827 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	Impact of KsgA/Dim1 on proteostasis in Haloferax volcanii and Escherichia coli
Description	Shotgun label-free analysis of Haloferax volcanii wildtype cells in comparison to strains deleted and catalytically impaired of the almost universally conserved ribosomal RNA dimethyltransferase KsgA/Dim1and of Escherichia coli wildtype strain in comparison to KsgA/Dim1 deleted strain.
HostingRepository	PRIDE
AnnounceDate	2021-01-25
AnnouncementXML	Submission_2021-01-24_22:56:30.xml
DigitalObjectIdentifier	https://dx.doi.org/10.6019/PXD021827
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Supported dataset by repository
PrimarySubmitter	Marlene Oeffinger
SpeciesList	scientific name: Escherichia coli; NCBI TaxID: 562; scientific name: Haloferax volcanii; NCBI TaxID: 2246;
ModificationList	monoacetylated residue; monohydroxylated residue; iodoacetamide derivatized residue
Instrument	Orbitrap Fusion

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2020-10-05 03:51:22	ID requested
⏵ 1	2021-01-24 22:56:31	announced

Publication List

Kn, ü, ppel R, Trahan C, Kern M, Wagner A, Gr, ü, nberger F, Hausner W, Quax TEF, Albers SV, Oeffinger M, Ferreira-Cerca S, Insights into synthesis and function of KsgA/Dim1-dependent rRNA modifications in archaea. Nucleic Acids Res, 49(3):1662-1687(2021) [pubmed]

Kn, ü, ppel R, Trahan C, Kern M, Wagner A, Gr, ü, nberger F, Hausner W, Quax TEF, Albers SV, Oeffinger M, Ferreira-Cerca S, Insights into synthesis and function of KsgA/Dim1-dependent rRNA modifications in archaea. Nucleic Acids Res, 49(3):1662-1687(2021) [pubmed]

Keyword List

submitter keyword: KsgA, Dim1, dimethyltransferase, m6A, ribosome, archaea, Haloferax volcanii, Escherichia coli.

submitter keyword: KsgA, Dim1, dimethyltransferase, m6A, ribosome, archaea, Haloferax volcanii, Escherichia coli.

Contact List

Marlene Heloise Oeffinger
contact affiliation	Associate Research Professor, Institut de recherches cliniques de Montréal (IRCM) Professeure agrégée, Département de biochimie et médecine moléculaire, Université de Montréal Associate Professor, Division of Experimental Medicine, McGill University
contact email	marlene.oeffinger@ircm.qc.ca
lab head
Marlene Oeffinger
contact affiliation	Institut de recherches cliniques Montreal (IRCM) Universite de Montreal
contact email	marlene.oeffinger@ircm.qc.ca
dataset submitter

Full Dataset Link List

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/01/PXD021827
PRIDE project URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/01/PXD021827

PRIDE project URI

Repository Record List

[ + ]