PXD021753

PXD021753 is an original dataset announced via ProteomeXchange.

Title	Reshaping of the Arabidopsis thaliana proteome landscape and co-regulation of proteins in development and immunity
Description	Proteome remodeling is a fundamental adaptive response and proteins in complex and functionally related proteins are often co-expressed. Using a deep sampling strategy we define Arabidopsis thaliana tissue core proteomes at around 10,000 proteins per tissue and absolutely quantify (copy numbers per cell) nearly 16,000 proteins throughout the plant lifecycle. A proteome wide survey of global post translational modification revealed amino acid exchanges pointing to potential conservation of translational infidelity in eukaryotes. The deep proteome data is available from PRIDE submission PXD019330. Those results were complemented in this submission with parallel reaction monitoring (PRM) targeted proteomics over 1, 3 and 16 hours of flg22 exposure. The extensive coverage of the Arabidopsis proteome in various biological scenarios presents a rich resource to plant biologists that we make available to the community.
HostingRepository	PRIDE
AnnounceDate	2020-10-02
AnnouncementXML	Submission_2020-10-19_00:41:53.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Steffen Neumann
SpeciesList	scientific name: Arabidopsis thaliana (Mouse-ear cress); NCBI TaxID: 3702;
ModificationList	monohydroxylated residue; iodoacetamide derivatized residue
Instrument	Q Exactive Plus

Revision	Datetime	Status	ChangeLog Entry
0	2020-09-30 00:51:35	ID requested
1	2020-10-02 00:18:18	announced
⏵ 2	2020-10-19 00:41:54	announced	2020-10-19: Updated publication reference for PubMed record(s): 33007468.

Bassal M, Abukhalaf M, Majovsky P, Thieme D, Herr T, Ayash M, Tabassum N, Al Shweiki MR, Proksch C, Hmedat A, Ziegler J, Lee J, Neumann S, Hoehenwarter W, Reshaping of the Arabidopsis thaliana Proteome Landscape and Co-regulation of Proteins in Development and Immunity. Mol Plant, 13(12):1709-1732(2020) [pubmed]

submitter keyword: Arabidopsis, deep proteomics, protein co-expression. proteome, senescence, ribosome, seed proteome, photosynthesis, plant immunity, jasmonate

Wolfgang Hoehenwarter
contact affiliation	Leibniz Institute of Plant Biochemistry Research Group Head Proteome Biology of Plant Interactions
contact email	Wolfgang.Hoehenwarter@ipb-halle.de
lab head
Steffen Neumann
contact affiliation	IPB Halle
contact email	sneumann@ipb-halle.de
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/10/PXD021753

PRIDE project URI

• PRIDE
  1. PXD021753
     1. Label: PRIDE project
     2. Name: Reshaping of the Arabidopsis thaliana proteome landscape and co-regulation of proteins in development and immunity