PXD021267

PXD021267 is an original dataset announced via ProteomeXchange.

Title	Auxin-triggered changes in the Arabidopsis root tip (phospho)proteome reveal novel root growth regulators
Description	Canonical auxin signalling starts with auxin binding to the receptor complex, followed by modulation of gene transcription and protein abundance (Tan et al., 2007; Chapman and Estelle, 2009; Slade et al., 2017). However, recent studies also showed an alternative mechanism in roots involving intra-cellular auxin perception, but not transcriptional reprogramming (Fendrych et al., 2018). Despite knowledge on effects of auxin on Arabidopsis root growth at the protein and phosphorylation level is increasing (Zhang et al., 2013; Mattei et al., 2013; Slade et al., 2017), it still remains incomplete. To address this gap in our knowledge, we explored the impact of auxin on the root tip proteome and phosphoproteome.
HostingRepository	PRIDE
AnnounceDate	2021-09-09
AnnouncementXML	Submission_2021-09-09_09:37:17.334.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Cassio Flavio Fonseca de Lima
SpeciesList	scientific name: Arabidopsis thaliana (Mouse-ear cress); NCBI TaxID: 3702;
ModificationList	phosphorylated residue; monohydroxylated residue; iodoacetamide derivatized residue
Instrument	Q Exactive

Revision	Datetime	Status	ChangeLog Entry
0	2020-09-02 01:11:47	ID requested
⏵ 1	2021-09-09 09:37:18	announced

Nikonorova N, Murphy E, Fonseca de Lima CF, Zhu S, van de Cotte B, Vu LD, Balcerowicz D, Li L, Kong X, De Rop G, Beeckman T, Friml J, Vissenberg K, Morris PC, Ding Z, De Smet I, The Arabidopsis Root Tip (Phospho)Proteomes at Growth-Promoting versus Growth-Repressing Conditions Reveal Novel Root Growth Regulators. Cells, 10(7):(2021) [pubmed]

submitter keyword: Auxin, Plant, Phosphoproteomoics

Ive De Smet
contact affiliation	Ghent University, Department of Plant Biotechnology and Bioinformatics, 9052 Ghent, Belgium VIB Center for Plant Systems Biology, 9052 Ghent, Belgium Division of Plant and Crop Sciences, School of Biosciences, University of Nottingham, Loughborough LE12 5RD, United Kingdom. Centre for Plant Integrative Biology, University of Nottingham, Loughborough LE12 5RD, United Kingdom.
contact email	Ive.DeSmet@psb.vib-ugent.be
lab head
Cassio Flavio Fonseca de Lima
contact affiliation	PhD student
contact email	cafon@psb.ugent.be
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/09/PXD021267

PRIDE project URI

• PRIDE
  1. PXD021267
     1. Label: PRIDE project
     2. Name: Auxin-triggered changes in the Arabidopsis root tip (phospho)proteome reveal novel root growth regulators