PXD020937

PXD020937 is an original dataset announced via ProteomeXchange.

Title	Bioplatforms Australia: Antibiotic Resistant Sepsis Pathogens Framework Initiative - Streptococcus pneumoniae
Description	The Antibiotic Resistant Sepsis Pathogens Framework Initiative aims to develop a framework dataset of 5 sepsis pathogens (Escherichia coli, Klebsiella pneumoniae complex, Staphylococcus aureus, Streptococcus pneumoniae and Streptococcus pyogenes, 5 strains each) using an integrated application of genomic, transcriptomic, metabolomic and proteomic technologies. This submission contains the results from five Streptococcus pneumoniae strains (4496, 947, 4559, 180-2, 180-15) grown under three conditions: RPMI supplemented with glucose, RPMI supplemented with galactose, or pooled human sera. Six replicates of each condition were subjected to shotgun proteomics and label-free MS1-based quantitation.
HostingRepository	PRIDE
AnnounceDate	2021-07-05
AnnouncementXML	Submission_2021-07-04_19:52:19.190.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Robert Goode
SpeciesList	scientific name: Streptococcus pneumoniae; NCBI TaxID: 1313;
ModificationList	monohydroxylated residue; iodoacetamide derivatized residue; deamidated residue
Instrument	Q Exactive

Revision	Datetime	Status	ChangeLog Entry
0	2020-08-17 00:01:54	ID requested
⏵ 1	2021-07-04 19:52:19	announced

Dataset with its publication pending

submitter keyword: sepsis, antibiotic resistance, proteomics, orbitrap, DDA, LFQ, Streptococcus pneumoniae, RPMI, sera, galactose, glucose

Mabel Lum (project manager)
contact affiliation	Bioplatforms Australia
contact email	mlum@bioplatforms.com
lab head
Robert Goode
contact affiliation	Monash Proteomics and Metabolomics Facility, Monash University
contact email	robert.goode@monash.edu
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/07/PXD020937

PRIDE project URI

• PRIDE
  1. PXD020937
     1. Label: PRIDE project
     2. Name: Bioplatforms Australia: Antibiotic Resistant Sepsis Pathogens Framework Initiative - Streptococcus pneumoniae