PXD020839 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | Bioplatforms Australia: Antibiotic Resistant Sepsis Pathogens Framework Initiative - Klebsiella pneumoniae complex |
Description | The Antibiotic Resistant Sepsis Pathogens Framework Initiative aims to develop a framework dataset of 5 sepsis pathogens (Escherichia coli, Klebsiella pneumoniae complex, Staphylococcus aureus, Streptococcus pneumoniae and Streptococcus pyogenes, 5 strains each) using an integrated application of genomic, transcriptomic, metabolomic and proteomic technologies. This submission contains the results from six Klebsiella strains (four Klebsiella variicola: AJ005, AJ292, 03-311-0071, 04153260899A and two Klebsiella pneumoniae: AJ218, KPC2) grown in either RPMI or pooled human sera. Six replicates of each condition were subjected to shotgun proteomics and label-free MS1-based quantitation. |
HostingRepository | PRIDE |
AnnounceDate | 2021-07-05 |
AnnouncementXML | Submission_2021-07-04_19:47:40.305.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | Robert Goode |
SpeciesList | scientific name: Klebsiella variicola; NCBI TaxID: 244366; scientific name: Klebsiella pneumoniae; NCBI TaxID: 573; |
ModificationList | monohydroxylated residue; iodoacetamide derivatized residue; deamidated residue |
Instrument | Q Exactive |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2020-08-11 00:44:58 | ID requested | |
⏵ 1 | 2021-07-04 19:47:40 | announced | |
Publication List
Dataset with its publication pending |
Keyword List
submitter keyword: sepsis, antibiotic resistance, proteomics, orbitrap, DDA, LFQ, Klebsiella, RPMI, sera |
Contact List
Mabel Lum (project manager) |
contact affiliation | Bioplatforms Australia |
contact email | mlum@bioplatforms.com |
lab head | |
Robert Goode |
contact affiliation | Monash Proteomics and Metabolomics Facility, Monash University |
contact email | robert.goode@monash.edu |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/07/PXD020839 |
PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD020839
- Label: PRIDE project
- Name: Bioplatforms Australia: Antibiotic Resistant Sepsis Pathogens Framework Initiative - Klebsiella pneumoniae complex