PXD020793

PXD020793 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	Proteome profiling of FF and FFPE microdissected human kidney tissue
Description	Aim of the project was to evaluate several MS-comaptible detergents for processing fresh frozen (FF) and formalin fixed paraffin embedded (FFPE) microdissected human kidney tissue. Here we have evaluated sensitivity of the methods and their applicability on FF and FFPE tissues, as well as investigated for the appropriateness of the use of FFPE tissues.
HostingRepository	PRIDE
AnnounceDate	2022-02-22
AnnouncementXML	Submission_2022-02-22_04:12:38.652.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Irena Dapic
SpeciesList	scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationList	iodoacetamide derivatized residue
Instrument	TripleTOF 5600

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2020-08-07 04:20:03	ID requested
⏵ 1	2022-02-22 04:12:39	announced

Publication List

Dapic I, Uwugiaren N, Kers J, Mohammed Y, Goodlett DR, Corthals G, Evaluation of Fast and Sensitive Proteome Profiling of FF and FFPE Kidney Patient Tissues. Molecules, 27(3):(2022) [pubmed]

Dapic I, Uwugiaren N, Kers J, Mohammed Y, Goodlett DR, Corthals G, Evaluation of Fast and Sensitive Proteome Profiling of FF and FFPE Kidney Patient Tissues. Molecules, 27(3):(2022) [pubmed]

Keyword List

submitter keyword: Kidney, FF, FFPE, MS-compatible protocols, mass spectrometry

submitter keyword: Kidney, FF, FFPE, MS-compatible protocols, mass spectrometry

Contact List

Irena Dapic
contact affiliation	International Centre for Cancer Vaccine Science, University of Gdansk
contact email	irena.dapic@ug.edu.pl
lab head
Irena Dapic
contact affiliation	International Centre for Cancer Vaccine Science
contact email	irena.dapic@ug.edu.pl
dataset submitter

Full Dataset Link List

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/02/PXD020793
PRIDE project URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/02/PXD020793

PRIDE project URI

Repository Record List

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