PXD020785

PXD020785 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	A comprehensive spectral assay library to quantify the Escherichia coli proteome by DIA/SWATH-MS
Description	A comprehensive and high-quality E. coli spectral assay library for 56,182 proteotypic peptides mapped to 4,014 (91.5%) of the 4,389 annotated proteins using one- and two-dimensional fractionated samples, and ion mobility separation.
HostingRepository	PRIDE
AnnounceDate	2020-10-19
AnnouncementXML	Submission_2020-11-17_08:48:45.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Mukul Midha
SpeciesList	scientific name: Escherichia coli; NCBI TaxID: 562;
ModificationList	monohydroxylated residue; iodoacetamide derivatized residue
Instrument	TripleTOF 5600; TripleTOF 6600

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2020-08-07 04:12:45	ID requested
1	2020-10-19 00:06:40	announced
⏵ 2	2020-11-17 08:48:46	announced	2020-11-17: Updated publication reference for PubMed record(s): 33184295.

Publication List

Midha MK, Kusebauch U, Shteynberg D, Kapil C, Bader SL, Reddy PJ, Campbell DS, Baliga NS, Moritz RL, A comprehensive spectral assay library to quantify the Escherichia coli proteome by DIA/SWATH-MS. Sci Data, 7(1):389(2020) [pubmed]

Midha MK, Kusebauch U, Shteynberg D, Kapil C, Bader SL, Reddy PJ, Campbell DS, Baliga NS, Moritz RL, A comprehensive spectral assay library to quantify the Escherichia coli proteome by DIA/SWATH-MS. Sci Data, 7(1):389(2020) [pubmed]

Keyword List

submitter keyword: E. coli, DDA-MS, Spectral assay library

submitter keyword: E. coli, DDA-MS, Spectral assay library

Contact List

Prof. Robert L. Moritiz
contact affiliation	Head of Proteomics Research Institute for Systems Biology 401 Terry Ave N, Seattle, WA 98109, USA
contact email	robert.moritz@systemsbiology.org
lab head
Mukul Midha
contact affiliation	Institute for Systems Biology
contact email	mmidha@systemsbiology.org
dataset submitter

Full Dataset Link List

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/10/PXD020785
PRIDE project URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/10/PXD020785

PRIDE project URI

Repository Record List

[ + ]