PXD020692

PXD020692 is an original dataset announced via ProteomeXchange.

Title	Washington state shellfish hatchery microbiome
Description	Effluent from geoduck clam larval rearing tanks at two different pH (8.2 and 7.1) was collected at 4 time points (Days 1, 5, 8, and 12) over 12 days in a shellfish hatchery in Washington state, USA. The water was filtered to 0.2 microns to retain the bacterial fraction.
HostingRepository	PRIDE
AnnounceDate	2021-04-21
AnnouncementXML	Submission_2022-01-24_10:34:46.012.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Emma Timmins-Schiffman
SpeciesList	scientific name: estuary metagenome; NCBI TaxID: 1649191;
ModificationList	No PTMs are included in the dataset
Instrument	Q Exactive

Revision	Datetime	Status	ChangeLog Entry
0	2020-08-03 02:39:18	ID requested
1	2021-04-20 22:19:23	announced
⏵ 2	2022-01-24 10:34:46	announced	2022-01-24: Updated publication reference for PubMed record(s): 33902744.

Timmins-Schiffman E, White SJ, Thompson RE, Vadopalas B, Eudeline B, Nunn BL, Roberts SB, Coupled microbiome analyses highlights relative functional roles of bacteria in a bivalve hatchery. Environ Microbiome, 16(1):7(2021) [pubmed]

submitter keyword: microbiome, metaproteomics, metagenomics, DDA

Brook Nunn
contact affiliation	University of Washington, Department of Genome Sciences
contact email	brookh@uw.edu
lab head
Emma Timmins-Schiffman
contact affiliation	University of Washington
contact email	emsie25@gmail.com
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/04/PXD020692

PRIDE project URI

• PRIDE
  1. PXD020692
     1. Label: PRIDE project
     2. Name: Washington state shellfish hatchery microbiome