PXD020681

PXD020681 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	Physiological and molecular responses to ocean acidification in a model marine symbiosis
Description	Pocilloporid corals (Pocillopora acuta) from an upwelling coral reef in Southern Taiwan (Houbihu) were exposed to one of four experimental treatments: ambient temperature (25C)+ambient pCO2 (~430 ppm), ambient temperature+high pCO2 (~850 ppm), high temperature (29C)+ambient pCO2, or high temperature+high pCO2. Proteins were extracted from 2-3 replicates per treatment (n=11 total), digested, and analyzed by iTRAQ followed by nano-liquid chromatography and MS/MS. Since there are only eight iTRAQ labels, 6 and 5 samples were run in each batch ("1" & "2," respectively, in the attached documents), and a normalizer sample was labeled with iTRAQ tag 113 and run in both batches to control for batch-to-batch variation. I am attaching the RAW files, MZML files, MZID files, the P. acuta-Cladocopium transcriptome (conceptually translated to proteins; as a fasta file), a supplemental data (Excel) file, and the associated manuscript, which has not yet been submitted and it subject to change.
HostingRepository	MassIVE
AnnounceDate	2022-04-20
AnnouncementXML	Submission_2022-04-20_12:05:58.828.xml
DigitalObjectIdentifier
ReviewLevel	Non peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Supported dataset by repository
PrimarySubmitter	ANDERSON MAYFIELD
SpeciesList	scientific name: Pocillopora acuta; NCBI TaxID: 1491507; scientific name: Cladocopium sp. clade C; NCBI TaxID: 293275;
ModificationList	iTRAQ8plex
Instrument	Q Exactive

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2020-08-01 08:54:07	ID requested
⏵ 1	2022-04-20 12:05:59	announced

Publication List

no publication

no publication

Keyword List

submitter keyword: coral reefs, dinoflagellates, ocean acidification, global climate change

submitter keyword: coral reefs, dinoflagellates, ocean acidification, global climate change

Contact List

Anderson Mayfield
contact affiliation	University of Miami
contact email	abm64@miami.edu
lab head
ANDERSON MAYFIELD
contact affiliation	N/A
contact email	andersonblairmayfield@gmail.com
dataset submitter

Full Dataset Link List

MassIVE dataset URI
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MassIVE dataset URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://massive.ucsd.edu/MSV000085868/