PXD020545

PXD020545 is an original dataset announced via ProteomeXchange.

Title	i. Bioplatforms Australia: Antibiotic Resistant Sepsis Pathogens Framework Initiative – Escherichia coli
Description	The Antibiotic Resistant Sepsis Pathogens Framework Initiative aims to develop a framework dataset of 5 sepsis pathogens (Escherichia coli, Klebsiella pneumoniae complex, Staphylococcus aureus, Streptococcus pneumoniae and Streptococcus pyogenes, 5 strains each) using an integrated application of genomic, transcriptomic, metabolomic and proteomic technologies. This submission contains the results from five Escherichia coli strains (B36, MS14384, MS14385, MS14386, MS14387) grown in either RPMI or pooled human sera. Six replicates of each condition were subjected to shotgun proteomics and label-free MS1-based quantitation.
HostingRepository	PRIDE
AnnounceDate	2024-10-22
AnnouncementXML	Submission_2024-10-22_05:23:38.844.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Robert Goode
SpeciesList	scientific name: Escherichia coli; NCBI TaxID: 562;
ModificationList	monohydroxylated residue; acetylated residue; iodoacetamide derivatized residue; deamidated residue
Instrument	Q Exactive

Revision	Datetime	Status	ChangeLog Entry
0	2020-07-23 17:47:53	ID requested
1	2021-07-04 19:44:58	announced
⏵ 2	2024-10-22 05:23:39	announced	2024-10-22: Updated project metadata.

Dataset with its publication pending

submitter keyword: proteomics, Escherichia coli, RPMI, orbitrap, LFQ, sera, antibiotic resistance,sepsis, DDA

Mabel Lum
contact affiliation	Bioplatforms Australia (project manager)
contact email	mlum@bioplatforms.com
lab head
Robert Goode
contact affiliation	Monash Proteomics and Metabolomics Facility, Monash University
contact email	robert.goode@monash.edu
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/07/PXD020545

PRIDE project URI

• PRIDE
  1. PXD020545
     1. Label: PRIDE project
     2. Name: i. Bioplatforms Australia: Antibiotic Resistant Sepsis Pathogens Framework Initiative – Escherichia coli