PXD020529

PXD020529 is an original dataset announced via ProteomeXchange.

Title	Chemical and Random Additive Noise Elimination (CRANE) - case_study - multicenter_dataset
Description	The effectiveness of the novel electrospray ionisation - liquid chromatography mass spectrometry (ESI-LC-MS) data de-noising technique, CRANE, is demonstrated by denoising the MS1 and all the MS2 windows of the multicentre, data-independent acquisi-tion (DIA) MS dataset from Navarro, et al. (2016).
HostingRepository	PRIDE
AnnounceDate	2024-10-22
AnnouncementXML	Submission_2024-10-22_05:24:18.977.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Akila Seneviratne
SpeciesList	scientific name: Escherichia coli; NCBI TaxID: 562; scientific name: Homo sapiens (Human); NCBI TaxID: 9606; scientific name: Saccharomyces cerevisiae (Baker's yeast); NCBI TaxID: 4932;
ModificationList	monohydroxylated residue; iodoacetamide derivatized residue
Instrument	TripleTOF 5600

Revision	Datetime	Status	ChangeLog Entry
0	2020-07-23 03:20:07	ID requested
1	2021-07-26 08:21:59	announced
⏵ 2	2024-10-22 05:24:20	announced	2024-10-22: Updated project metadata.

10.1038/nbt.3685;

Navarro P, Kuharev J, Gillet LC, Bernhardt OM, MacLean B, R, ö, st HL, Tate SA, Tsou CC, Reiter L, Distler U, Rosenberger G, Perez-Riverol Y, Nesvizhskii AI, Aebersold R, Tenzer S, A multicenter study benchmarks software tools for label-free proteome quantification. Nat Biotechnol, 34(11):1130-1136(2016) [pubmed]

submitter keyword: LC-MSMS, Random Noise, Chemical Noise, Denoise, Baseline Noise,DIA

Qing Zhong
contact affiliation	Children’s Medical Research Institute, Faculty of Medicine and Health, The University of Sydney, Westmead, NSW 2145, Australia
contact email	qzhong@cmri.org.au
lab head
Akila Seneviratne
contact affiliation	Children's Medical Research Institute, Westmead, NSW 2145
contact email	aseneviratne@cmri.org.au
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/07/PXD020529

PRIDE project URI

• PRIDE
  1. PXD020529
     1. Label: PRIDE project
     2. Name: Chemical and Random Additive Noise Elimination (CRANE) - case_study - multicenter_dataset