PXD020518

PXD020518 is an original dataset announced via ProteomeXchange.

Title	Innate and adaptive serum proteomes of Santa Gertrudis cattle in response to Rhipicephalus microplus infestation
Description	Previous studies have applied genomics and transcriptomics to identify the immune and genetic markers as key indicator traits for cattle tick susceptibility/resistance, however, results differed between breeds, and host proteomics and metabolomics were not considered. We used serum samples from Santa Gertrudis cattle phenotypically divided into groups as tick-resistant (TR) and -susceptible (TS) to conduct differential abundance analyses of protein profiles between the two groups. The serum proteins were digested into peptides followed by identification and quantification by sequential window acquisition of all instances of theoretical fragment ion mass spectrometry (SWATH-MS).
HostingRepository	PRIDE
AnnounceDate	2024-05-10
AnnouncementXML	Submission_2024-05-10_15:45:26.748.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Ali Raza
SpeciesList	scientific name: Bos taurus (Bovine); NCBI TaxID: 9913;
ModificationList	No PTMs are included in the dataset
Instrument	TripleTOF 5600

Revision	Datetime	Status	ChangeLog Entry
0	2020-07-22 23:11:57	ID requested
⏵ 1	2024-05-10 15:45:27	announced

10.1111/pim.12836;

Raza A, Schulz BL, Nouwens A, Jackson LA, Piper EK, James P, Jonsson NN, Tabor AE, Serum proteomes of Santa Gertrudis cattle before and after infestation with Rhipicephalus australis ticks. Parasite Immunol, 43(7):e12836(2021) [pubmed]

submitter keyword: Serum,Cattle, Host resistance, Rhipicephalus microplus, Proteomics

Ala Tabor
contact affiliation	Centre for Animal Science Queensland Alliance for Agriculture and Food Innovation, University of Queensland, Australia
contact email	a.tabor@uq.edu.au
lab head
Ali Raza
contact affiliation	University of Queensland
contact email	a.raza@uq.edu.au
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2024/05/PXD020518

PRIDE project URI

• PRIDE
  1. PXD020518
     1. Label: PRIDE project
     2. Name: Innate and adaptive serum proteomes of Santa Gertrudis cattle in response to Rhipicephalus microplus infestation