PXD020392

PXD020392 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	Methodologies comparison of porcine lung tissue
Description	Mechanistic study of H2S interference on swine, we used TMT-based comparative proteomics of lung tissues from control and hydrogen sulfide (H2S) breathing swines as a test case for evaluation of MS2, SPS MS3 and RTS-MS3 acquisition methods in both Orbitrap Fusion and Orbitrap Eclipse.
HostingRepository	PRIDE
AnnounceDate	2024-10-22
AnnouncementXML	Submission_2024-10-22_05:46:23.092.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Sheng Zhang
SpeciesList	scientific name: Sus scrofa domesticus (domestic pig); NCBI TaxID: 9825;
ModificationList	No PTMs are included in the dataset
Instrument	Orbitrap Fusion Lumos

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2020-07-15 17:15:54	ID requested
1	2023-06-02 08:44:45	announced
2	2023-11-14 08:48:32	announced	2023-11-14: Updated project metadata.
⏵ 3	2024-10-22 05:46:23	announced	2024-10-22: Updated project metadata.

Publication List

Fu Q, Liu Z, Bhawal R, Anderson ET, Sherwood RW, Yang Y, Thannhauser T, Schroyen M, Tang X, Zhang H, Zhang S, methodologies for lung proteomes of hydrogen sulfide treated swine. Anal Bioanal Chem, 413(2):419-429(2021) [pubmed]
10.1007/s00216-020-03009-5;

Fu Q, Liu Z, Bhawal R, Anderson ET, Sherwood RW, Yang Y, Thannhauser T, Schroyen M, Tang X, Zhang H, Zhang S, methodologies for lung proteomes of hydrogen sulfide treated swine. Anal Bioanal Chem, 413(2):419-429(2021) [pubmed]

10.1007/s00216-020-03009-5;

Keyword List

ProteomeXchange project tag: Biology/Disease-Driven Human Proteome Project (B/D-HPP), Food and Nutrition (B/D-HPP), Human Proteome Project
submitter keyword: synchronous precursor selection, mass spectrometry, isobaric tandem mass tags, real-time search,quantitative proteomics, lung tissues

ProteomeXchange project tag: Biology/Disease-Driven Human Proteome Project (B/D-HPP), Food and Nutrition (B/D-HPP), Human Proteome Project

submitter keyword: synchronous precursor selection, mass spectrometry, isobaric tandem mass tags, real-time search,quantitative proteomics, lung tissues

Contact List

Qin Fu
contact affiliation	Cornell University
contact email	qf44@cornell.edu
lab head
Sheng Zhang
contact affiliation	Cornell University
contact email	sz14@cornell.edu
dataset submitter

Full Dataset Link List

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/06/PXD020392
PRIDE project URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/06/PXD020392

PRIDE project URI

Repository Record List

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