PXD020322

PXD020322 is an original dataset announced via ProteomeXchange.

Title	New mixture models for decoy-free false discovery rate estimation in mass-spectrometry proteomics
Description	We introduce a new decoy-free framework for false discovery rate (FDR) estimation that generalizes present decoy-free approaches (DFAs) while exploiting more search data in a manner similar to target-decoy approaches (TDAs).
HostingRepository	PRIDE
AnnounceDate	2021-01-11
AnnouncementXML	Submission_2021-01-11_00:36:48.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Michal Gregus
SpeciesList	scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationList	monohydroxylated residue; iodoacetamide derivatized residue
Instrument	Orbitrap Fusion Lumos

Revision	Datetime	Status	ChangeLog Entry
0	2020-07-13 00:28:54	ID requested
⏵ 1	2021-01-11 00:36:49	announced

Peng Y, Jain S, Li YF, Gregu, š M, Ivanov AR, Vitek O, Radivojac P, New mixture models for decoy-free false discovery rate estimation in mass spectrometry proteomics. Bioinformatics, 36(Suppl_2):i745-i753(2020) [pubmed]

submitter keyword: bioinformatics, decoy-free framework, false discovery rate, proteomics

Alexander R. Ivanov
contact affiliation	1 Department of Chemistry and Chemical Biology, Northeastern University, Boston, Massachusetts, U.S.A. 2 Barnett Institute of Chemical and Biological Analysis, Northeastern University, Boston, Massachusetts, U.S.A
contact email	a.ivanov@northeastern.edu
lab head
Michal Gregus
contact affiliation	Northeastern University
contact email	gregus.michal89@gmail.com
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/01/PXD020322

PRIDE project URI

• PRIDE
  1. PXD020322
     1. Label: PRIDE project
     2. Name: New mixture models for decoy-free false discovery rate estimation in mass-spectrometry proteomics