PXD020277 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | Site-specific N-glycoproteomic analysis of Intrahepatic cholangiocarcinoma and Hepatocellular carcinoma |
Description | In this study,we performed integrated glycoproteomic and global proteomic analysis of tumor tissues of ICC and HCC to investigate the differences in site-specific glycosylation and proteins between ICC and HCC tumors. The paired paracancer tissue were also included as controls to determine the site-specific glycosylation changes in ICC and HCC tumors. The alteration extents in glycopeptide, global proteome, and normalized glycosylation in different sample groups were systematically compared. |
HostingRepository | PRIDE |
AnnounceDate | 2024-10-22 |
AnnouncementXML | Submission_2024-10-22_05:38:52.780.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | Jun Li |
SpeciesList | scientific name: Homo sapiens (Human); NCBI TaxID: 9606; |
ModificationList | No PTMs are included in the dataset |
Instrument | Orbitrap Fusion Lumos |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2020-07-09 03:59:54 | ID requested | |
1 | 2022-08-11 09:29:06 | announced | |
⏵ 2 | 2024-10-22 05:38:57 | announced | 2024-10-22: Updated project metadata. |
Publication List
10.1002/1878-0261.13147; |
Li J, Zhao T, Li J, Shen J, Jia L, Zhu B, Dang L, Ma C, Liu D, Mu F, Hu L, Sun S, Precision N-glycoproteomics reveals elevated LacdiNAc as a novel signature of intrahepatic cholangiocarcinoma. Mol Oncol, 16(11):2135-2152(2022) [pubmed] |
Keyword List
submitter keyword: Intrahepatic cholangiocarcinoma(ICC), intact glycopeptide, site-specific glycosylation, Hepatocellular carcinoma(HCC), glycoproteome, LC-MS/MS |
Contact List
Shisheng Sun |
contact affiliation | Northwest University |
contact email | suns@nwu.edu.cn |
lab head | |
Jun Li |
contact affiliation | Northwest University |
contact email | jun.li@nwu.edu.cn |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/08/PXD020277 |
PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD020277
- Label: PRIDE project
- Name: Site-specific N-glycoproteomic analysis of Intrahepatic cholangiocarcinoma and Hepatocellular carcinoma