PXD020186
PXD020186 is an original dataset announced via ProteomeXchange.
Dataset Summary
Title | The HLA-Ligand-Atlas. A resource of natural HLA ligands presented on benign tissues |
Description | A use case of the benign HLA-Ligand-Atlas is the prioritization of tumor-associated targets for e.g. peptide vaccination. Based on three glioblastoma samples, we illustrated how many of these peptides are covered in the benign dataset. The experimental and computational workflow for the isolation and identification of the glioblastoma immunopeptidomes is the same, as for all samples included in the HLA Ligand Atlas. As the three glioblastoma samples are not included in the HLA Ligand Atlas dataset, they have been deposited under a separate submission. |
HostingRepository | PRIDE |
AnnounceDate | 2024-10-22 |
AnnouncementXML | Submission_2024-10-22_05:21:11.205.xml |
DigitalObjectIdentifier | https://dx.doi.org/10.6019/PXD020186 |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Supported dataset by repository |
PrimarySubmitter | Ana Marcu |
SpeciesList | scientific name: Homo sapiens (Human); NCBI TaxID: 9606; |
ModificationList | No PTMs are included in the dataset |
Instrument | Orbitrap Fusion Lumos |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
---|---|---|---|
0 | 2020-07-03 07:21:42 | ID requested | |
1 | 2021-04-16 03:04:18 | announced | |
2 | 2021-04-18 22:03:05 | announced | 2021-04-19: Updated publication reference for PubMed record(s): 33858848. |
⏵ 3 | 2024-10-22 05:21:15 | announced | 2024-10-22: Updated project metadata. |
Publication List
10.1136/jitc-2020-002071; |
Marcu A, Bichmann L, Kuchenbecker L, Kowalewski DJ, Freudenmann LK, Backert L, M, ü, hlenbruch L, Szolek A, L, ü, bke M, Wagner P, Engler T, Matovina S, Wang J, Hauri-Hohl M, Martin R, Kapolou K, Walz JS, Velz J, Moch H, Regli L, Silginer M, Weller M, L, ö, ffler MW, Erhard F, Schlosser A, Kohlbacher O, Stevanovi, ć S, Rammensee HG, Neidert MC, HLA Ligand Atlas: a benign reference of HLA-presented peptides to improve T-cell-based cancer immunotherapy. J Immunother Cancer, 9(4):(2021) [pubmed] |
10.6019/PXD020186; |
Keyword List
submitter keyword: Human, HLA, Glioblastoma, Immunopeptidomics |
Contact List
Hans-Georg Rammensee | |
---|---|
contact affiliation | Department of Immunology, Interfaculty Institute for Cell Biology, Eberhard Karls University Tübingen |
contact email | hgrhgr2017@gmx.de |
lab head | |
Ana Marcu | |
contact affiliation | University of Tübingen, Interfaculty Institute for Cell Biology, Department of Immunology |
contact email | anamarcu.pe@gmail.com |
dataset submitter |
Full Dataset Link List
Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/04/PXD020186 |
PRIDE project URI |
Repository Record List
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