PXD020129

PXD020129 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	Proteomics analysis of serum from patients with invasive ductal carcinoma
Description	Mass spectrometry was utilized to analyze enriched, low abundance proteins from patient serum, in patients with invasive ductal carcinoma (IDC) breast cancer and controls with a positive mammogram and negative biospy. Proteins in each group were compared to identify IDC specific markers.
HostingRepository	PRIDE
AnnounceDate	2024-10-22
AnnouncementXML	Submission_2024-10-22_05:29:05.777.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Krystine Mansfield
SpeciesList	scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationList	monohydroxylated residue; iodoacetamide derivatized residue
Instrument	LTQ Orbitrap

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2020-06-30 18:48:26	ID requested
1	2021-09-09 07:22:23	announced
⏵ 2	2024-10-22 05:29:06	announced	2024-10-22: Updated project metadata.

Publication List

10.1186/s13058-020-01373-9;
Fredolini C, Pathak KV, Paris L, Chapple KM, Tsantilas KA, Rosenow M, Tegeler TJ, Garcia-Mansfield K, Tamburro D, Zhou W, Russo P, Massarut S, Facchiano F, Belluco C, De Maria R, Garaci E, Liotta L, Petricoin EF, Pirrotte P, Shotgun proteomics coupled to nanoparticle-based biomarker enrichment reveals a novel panel of extracellular matrix proteins as candidate serum protein biomarkers for early-stage breast cancer detection. Breast Cancer Res, 22(1):135(2020) [pubmed]

10.1186/s13058-020-01373-9;

Fredolini C, Pathak KV, Paris L, Chapple KM, Tsantilas KA, Rosenow M, Tegeler TJ, Garcia-Mansfield K, Tamburro D, Zhou W, Russo P, Massarut S, Facchiano F, Belluco C, De Maria R, Garaci E, Liotta L, Petricoin EF, Pirrotte P, Shotgun proteomics coupled to nanoparticle-based biomarker enrichment reveals a novel panel of extracellular matrix proteins as candidate serum protein biomarkers for early-stage breast cancer detection. Breast Cancer Res, 22(1):135(2020) [pubmed]

Keyword List

submitter keyword: invasive ductal carcinoma, mammography, serum, protein enrichment, nanoparticles

submitter keyword: invasive ductal carcinoma, mammography, serum, protein enrichment, nanoparticles

Contact List

Emanuel Petricoin
contact affiliation	Center for Applied Proteomics & Molecular Medicine, George Mason University, Manassas, VA
contact email	epetrico@gmu.edu
lab head
Krystine Mansfield
contact affiliation	TGen
contact email	kgarcia@tgen.org
dataset submitter

Full Dataset Link List

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/09/PXD020129
PRIDE project URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/09/PXD020129

PRIDE project URI

Repository Record List

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