PXD019973

PXD019973 is an original dataset announced via ProteomeXchange.

Title	The gut bacterium Extibacter muris produces secondary bile acids and influences liver physiology in gnotobiotic mice - Proteomics results
Description	In this study, mice were colonized from birth on with the minimal microbiota Oligo-MM with or without the addition of Extibacter muris. Extibacter muris is known to metabolize cholic acid to deoxycholic acid via 7α-dehydroxylation. The impact of Extibacter muris colonization on the liver proteome of mice under different diets was investigated using untargeted proteomics.
HostingRepository	PRIDE
AnnounceDate	2024-10-22
AnnouncementXML	Submission_2024-10-22_05:17:24.096.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Isabel Karkossa
SpeciesList	scientific name: Mus musculus (Mouse); NCBI TaxID: 10090;
ModificationList	iodoacetamide derivatized residue
Instrument	Q Exactive HF

Revision	Datetime	Status	ChangeLog Entry
0	2020-06-23 18:13:33	ID requested
1	2021-01-04 07:05:40	announced
⏵ 2	2024-10-22 05:17:24	announced	2024-10-22: Updated project metadata.

Streidl T, Karkossa I, Segura Mu, ñ, oz RR, Eberl C, Zaufel A, Plagge J, Schmaltz R, Schubert K, Basic M, Schneider KM, Afify M, Trautwein C, Tolba R, Stecher B, Doden HL, Ridlon JM, Ecker J, Moustafa T, von Bergen M, Ramer-Tait AE, Clavel T, produces secondary bile acids and influences liver physiology in gnotobiotic mice. Gut Microbes, 13(1):1-21(2021) [pubmed]

10.1080/19490976.2020.1854008;

submitter keyword: Mouse, TMT, Liver, Extibacter muris

Kristin Schubert
contact affiliation	Department of Molecular Systems Biology, UFZ, Helmholtz-Centre for Environmental Research, Leipzig, Germany
contact email	kristin.schubert@ufz.de
lab head
Isabel Karkossa
contact affiliation	Helmholtz-Centre for Environmental Research - UFZ
contact email	isabel.karkossa@ufz.de
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/01/PXD019973

PRIDE project URI

• PRIDE
  1. PXD019973
     1. Label: PRIDE project
     2. Name: The gut bacterium Extibacter muris produces secondary bile acids and influences liver physiology in gnotobiotic mice - Proteomics results