PXD019839

PXD019839 is an original dataset announced via ProteomeXchange.

Title	Intracellular pathways for lignin catabolism in white-rot fungi
Description	White-rot fungi (WRF), considered the most efficient organisms at degrading organic carbon in the biosphere, are found in plant cell wall lignin biopolymer. We employ multi-omics to demonstrate that Trametes versicolor and Gelatoporia subvermispora funnel lignin-derived aromatic compounds into central carbon metabolism via intracellular catabolic pathways. These results provide insights into global carbon cycling in soil ecosystems.
HostingRepository	PRIDE
AnnounceDate	2021-02-10
AnnouncementXML	Submission_2021-02-09_23:26:22.xml
DigitalObjectIdentifier	https://dx.doi.org/10.6019/PXD019839
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Supported dataset by repository
PrimarySubmitter	Matthew Monroe
SpeciesList	scientific name: Ceriporiopsis subvermispora; NCBI TaxID: 42742; scientific name: Trametes versicolor (White-rot fungus) (Coriolus versicolor); NCBI TaxID: 5325;
ModificationList	Oxidation
Instrument	Q Exactive

Revision	Datetime	Status	ChangeLog Entry
0	2020-06-17 06:34:52	ID requested
⏵ 1	2021-02-09 23:26:23	announced

Dataset with its publication pending

submitter keyword: white-rot fungi, lignin, poplar, aromatic compound, multi-omics, systems biology

Davinia Salvachua
contact affiliation	National Renewable Energy Laboratory, Golden (CO), USA
contact email	davinia.salvachua@nrel.gov
lab head
Matthew Monroe
contact affiliation	Pacific Northwest National Laboratory
contact email	matthew.monroe@pnnl.gov
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/02/PXD019839

PRIDE project URI

• PRIDE
  1. PXD019839
     1. Label: PRIDE project
     2. Name: Intracellular pathways for lignin catabolism in white-rot fungi