PXD019772

PXD019772 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	Proteomic study of avocado seed tissues (testa, cotyledon, and embryo) during postharvest shelf life
Description	In this study, we scrutinized by comparative proteomics using Tandem Mass Tags (TMT) couple to synchronous-precursor selection (SPS)-MS3 the dynamic of the proteome of specific tissues of avocado seeds (testa, cotyledon, and embryo) during postharvest shelf life. Our proteomics pipeline allows the identification of more proteins in testa compared to other tissues, and also, we could track the dynamic of more protein in this tissue during PSL. In general, proteins associated with stress, glycolic process, and starch metabolism were commonly identify in each tissue. In contracts, a drastic difference in protein translation, amino acid, and fatty acid metabolism was observed among tissues during PSL.
HostingRepository	PRIDE
AnnounceDate	2024-10-22
AnnouncementXML	Submission_2024-10-22_05:20:12.235.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Eliel Ruiz-May
SpeciesList	scientific name: Persea americana; NCBI TaxID: 3435;
ModificationList	TMT6plex-126 reporter+balance reagent acylated residue; monohydroxylated residue; iodoacetamide derivatized residue; deamidated residue
Instrument	Orbitrap Fusion

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2020-06-15 02:49:55	ID requested
1	2021-03-18 00:22:23	announced
⏵ 2	2024-10-22 05:20:13	announced	2024-10-22: Updated project metadata.

Publication List

Juarez-Escobar J, Guerrero-Analco JA, Zamora-Brise, ñ, o JA, Elizalde-Contreras JM, Bautista-Valle MV, Boj, ó, rquez-Vel, á, zquez E, Loyola-Vargas VM, Mata-Rosas M, Ru, í, z-May E, Tissue-specific proteome characterization of avocado seed during postharvest shelf life. J Proteomics, 235():104112(2021) [pubmed]
10.1016/j.jprot.2021.104112;

Juarez-Escobar J, Guerrero-Analco JA, Zamora-Brise, ñ, o JA, Elizalde-Contreras JM, Bautista-Valle MV, Boj, ó, rquez-Vel, á, zquez E, Loyola-Vargas VM, Mata-Rosas M, Ru, í, z-May E, Tissue-specific proteome characterization of avocado seed during postharvest shelf life. J Proteomics, 235():104112(2021) [pubmed]

10.1016/j.jprot.2021.104112;

Keyword List

submitter keyword: SPS-MS3, TMT, postharvest,Seed

submitter keyword: SPS-MS3, TMT, postharvest,Seed

Contact List

Eliel Ruiz-May
contact affiliation	Red de Estudios Moleculares Avanzados, Instituto de Ecologia, A.C., Mexico
contact email	eliel.ruiz@inecol.mx
lab head
Eliel Ruiz-May
contact affiliation	Instituto de Ecología, A.C.
contact email	eliel.ruiz@inecol.mx
dataset submitter

Full Dataset Link List

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/03/PXD019772
PRIDE project URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/03/PXD019772

PRIDE project URI

Repository Record List

[ + ]