PXD019748

PXD019748 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	Analysis of proline and lysine post-translational modifications of collagen from prolyl 3-hydroxylase 3 and lysyl hydroxylase 1 null mice
Description	We performed shotgun proteomic analysis of type V collagens purified from wild-type mice and prolyl 3-hydroxylase 3 or lysyl hydroxylase 1 null mice by LC-MS after trypsin digestion for identification of lysine glycosylation sites.
HostingRepository	jPOST
AnnounceDate	2021-02-19
AnnouncementXML	Submission_2022-11-21_19:49:57.550.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Yuki Taga
SpeciesList	scientific name: Mus musculus (Mouse); NCBI TaxID: 10090;
ModificationList	unknown modification; unknown modification; unknown modification; unknown modification; unknown modification
Instrument	instrument

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2020-06-15 00:25:07	ID requested
1	2021-02-18 16:33:47	announced
2	2022-09-18 04:02:38	announced	2022-09-18: Updated FTP location.
⏵ 3	2022-11-21 19:49:58	announced	2022-11-22: Updated PubMed.

Publication List

Ishikawa Y, Taga Y, Zientek K, Mizuno N, Salo AM, Semenova O, Tufa SF, Keene DR, Holden P, Mizuno K, Gould DB, Myllyharju J, B, ä, chinger HP, Type I and type V procollagen triple helix uses different subsets of the molecular ensemble for lysine posttranslational modifications in the rER. J Biol Chem, 296():100453(2021) [pubmed]

Ishikawa Y, Taga Y, Zientek K, Mizuno N, Salo AM, Semenova O, Tufa SF, Keene DR, Holden P, Mizuno K, Gould DB, Myllyharju J, B, ä, chinger HP, Type I and type V procollagen triple helix uses different subsets of the molecular ensemble for lysine posttranslational modifications in the rER. J Biol Chem, 296():100453(2021) [pubmed]

Keyword List

submitter keyword: post-translational modifications, collagen, lysyl hydroxylase, prolyl hydroxylase, endoplasmic reticulum, molecular chaperone

submitter keyword: post-translational modifications, collagen, lysyl hydroxylase, prolyl hydroxylase, endoplasmic reticulum, molecular chaperone

Contact List

Yoshihiro Ishikawa
lab head
Yuki Taga
contact affiliation	Nippi Research Institute of Biomatrix
dataset submitter

Full Dataset Link List

jPOST dataset URI
Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.jpostdb.org/JPST000744/

jPOST dataset URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.jpostdb.org/JPST000744/